View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16261_high_3 (Length: 311)
Name: NF16261_high_3
Description: NF16261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16261_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 3748809 - 3749092
Alignment:
| Q |
12 |
acagatattggaaaaggtcctgatagatcgttgttgcttaaatcaagggtgtctaatacggaggaagaattgattgtgaattcttctagtttactaaagt |
111 |
Q |
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| T |
3748809 |
acagatattggaaaaggtcctgatagatcgttgttgcttaaatctagggtgtctaatacggaggaagaattgattgtgaattcttctagtttactaaagt |
3748908 |
T |
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| Q |
112 |
ggttcaatgaaagccaaatattttttaacaatggaagtttaaaaaggaatgaaggaatggcacccgtgatagaattgttgctcaagttaatggtgacaag |
211 |
Q |
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| T |
3748909 |
ggttcaatgaaagccaaatattttttaacaatggaagtttaaaaaggaatgaaggaatggcacccgtgatagaattgttgctcaagttaatggtgacaag |
3749008 |
T |
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| Q |
212 |
gttatgcaatccttgattgtgagaagatgatgagttggtgagnnnnnnnnccatgtcaaaggatggcattggaccggtaaaact |
295 |
Q |
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| T |
3749009 |
gttatgcaatccttgattgtgagaagatgatgagttggtgagttttttttccatgtcaaaggatggcattggaccggtaaaact |
3749092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 5853390 - 5853280
Alignment:
| Q |
14 |
agatattggaaaaggtcctgatagatcgttgttgcttaaatcaagggtgtctaatacggaggaagaattgattgtgaattcttctagtttactaaagtgg |
113 |
Q |
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|||| |||||||||| ||||||||||| ||| | ||||||||||||| ||||||||||||||| | ||||||||||||||||||| || |||||||| |
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| T |
5853390 |
agattttggaaaaggccctgatagatcattgcttcttaaatcaagggattctaatacggaggaatatatgattgtgaattcttctagattgttaaagtgg |
5853291 |
T |
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| Q |
114 |
ttcaatgaaag |
124 |
Q |
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| T |
5853290 |
ttggatgaaag |
5853280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 5553034 - 5553144
Alignment:
| Q |
14 |
agatattggaaaaggtcctgatagatcgttgttgcttaaatcaagggtgtctaatacggaggaagaattgattgtgaattcttctagtttactaaagtgg |
113 |
Q |
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|||| |||||||||| |||||| |||| ||| | ||||| ||||||| ||||||| |||||||| |||||||||||||||| |||||||| |||||| |
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| T |
5553034 |
agattttggaaaaggccctgattgatcattgcttcttaattcaagggattctaatatagaggaagatatgattgtgaattcttcaagtttactgaagtgg |
5553133 |
T |
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| Q |
114 |
ttcaatgaaag |
124 |
Q |
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| T |
5553134 |
ttgaatgaaag |
5553144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 5857963 - 5858156
Alignment:
| Q |
15 |
gatattggaaaaggtcctgatagatcgttgttgcttaaatcaagggtgtctaatacggaggaagaattgattgtgaattcttctagtttactaaagtggt |
114 |
Q |
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|||||||||||||| ||||||| ||| ||| ||||||||||||| ||| ||| |||||||| |||||||||||||||||| | ||||||| |||| |
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| T |
5857963 |
gatattggaaaaggccctgataaatcattgctgcttaaatcaagaatgttcaat---gaggaagacatgattgtgaattcttctaatatactaaattggt |
5858059 |
T |
|
| Q |
115 |
tcaatgaaagccaaatattttttaacaatggaagtttaaaaaggaatgaaggaatggcacccgtgatagaattgttgctcaagttaatggtgacaag |
211 |
Q |
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| T |
5858060 |
tgaatgaaagccgaagctcttgtaataatgggagtctaaataggaaggaagggatgataccgttcatagaattgttaattaagtaaatagtgacaag |
5858156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 5583710 - 5583667
Alignment:
| Q |
18 |
attggaaaaggtcctgatagatcgttgttgcttaaatcaagggt |
61 |
Q |
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|||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
5583710 |
attggaaatggccctgatagatcattgttgcttaaatcaagggt |
5583667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 5564623 - 5564733
Alignment:
| Q |
14 |
agatattggaaaaggtcctgatagatcgttgttgcttaaatcaagggtgtctaatacggaggaagaattgattgtgaattcttctagtttactaaagtgg |
113 |
Q |
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|||| |||||||||| || ||||||| ||| ||||||||||||| |||| |||| ||||| ||| ||||||| ||||| |||| | || | |||||| |
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| T |
5564623 |
agatgttggaaaaggaccagatagatgattgctgcttaaatcaagagtgtttaatgaggagggagagatgattgtaaattcatctactgtattgaagtgg |
5564722 |
T |
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| Q |
114 |
ttcaatgaaag |
124 |
Q |
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|| |||||||| |
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| T |
5564723 |
ttgaatgaaag |
5564733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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