View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16261_low_2 (Length: 387)
Name: NF16261_low_2
Description: NF16261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16261_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 76 - 371
Target Start/End: Original strand, 39752174 - 39752459
Alignment:
| Q |
76 |
ttaaccatctagtttatttcatatgaacctgcatgcatctaattttcctttatttgcaaacaacacattctttcgtttttgtaatgattgcacaagaaat |
175 |
Q |
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| T |
39752174 |
ttaaccatctagtttatttcatatgaacctgcatgcatctaattttcctttatttgcaaacaacacattctttcgtttttgcaat-----------acat |
39752262 |
T |
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| Q |
176 |
acaattagttaaaaatttgcaagaactacgataaatgtagtttgattaaataaaatattaatagcataaattgaattacgtgcagtggaaccctcataac |
275 |
Q |
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| T |
39752263 |
tct-ttagttaaaaatttgcaagaactaagataaatgtagtttgattaaataaa-tattaatagcataaattgaattacgtgcagtggaaccctcataat |
39752360 |
T |
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| Q |
276 |
tttatcctaggaggctcgttcttggtgttcatcctaacgactagatatgtggtgagtgtcattgttgaaccaccttt---attagctaggaattatttt |
371 |
Q |
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| T |
39752361 |
tttatcctaggaggctcgttcttggtgttcatcctaacgactagatttgtggtgagtgtgattgctgaaccacctttataattagctaggaattatttt |
39752459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 39752038 - 39752112
Alignment:
| Q |
19 |
acttgtaatattaattaattatctagtcagcataattaactacatatctgaattatgttaaccatctagtttatt |
93 |
Q |
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| T |
39752038 |
acttgtaatattaattaattatctagtgagcataattaactacatatctgaattatgttaaccatctaatttatt |
39752112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 3603762 - 3603806
Alignment:
| Q |
49 |
cataattaactacatatctgaattatgttaaccatctagtttatt |
93 |
Q |
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| T |
3603762 |
cataattaactacatatttaaattgtgttaaccatctaatttatt |
3603806 |
T |
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