View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16261_low_7 (Length: 230)
Name: NF16261_low_7
Description: NF16261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16261_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 32600594 - 32600786
Alignment:
| Q |
17 |
aatatgtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcga |
116 |
Q |
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| T |
32600594 |
aataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaa |
32600693 |
T |
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| Q |
117 |
gcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatg |
213 |
Q |
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| T |
32600694 |
gcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatg |
32600786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 32590146 - 32590337
Alignment:
| Q |
17 |
aatatgtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcga |
116 |
Q |
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| T |
32590146 |
aataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaa |
32590245 |
T |
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| Q |
117 |
gcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacat |
212 |
Q |
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| T |
32590246 |
gcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacat |
32590337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 24883774 - 24883687
Alignment:
| Q |
43 |
caccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatct |
130 |
Q |
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| T |
24883774 |
caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 34577906 - 34578098
Alignment:
| Q |
17 |
aatatgtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcga |
116 |
Q |
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|||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| | |
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| T |
34577906 |
aatatgtatataaaaagtgtttcatgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaa |
34578005 |
T |
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| Q |
117 |
gcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatg |
213 |
Q |
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| T |
34578006 |
gcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatg |
34578098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 34593767 - 34593856
Alignment:
| Q |
44 |
accttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaat |
133 |
Q |
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||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||| |
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| T |
34593767 |
accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaat |
34593856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
90 |
ttgtcattcctccatttccaacttcgagcatatcaggatct |
130 |
Q |
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| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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