View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16262_low_1 (Length: 614)
Name: NF16262_low_1
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 176 - 607
Target Start/End: Original strand, 40544518 - 40544947
Alignment:
| Q |
176 |
tatcatgagttgcactaatcctcgaccttatatctcaaatcgaataatgagcaacttgatatttttattcccaaccaagggttaaggcaatgggacctta |
275 |
Q |
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| T |
40544518 |
tatcatgagttgcactaatcctcgaccttatatctcaaatcgaataatgagcaacttgatatttttattcccaaccaagggttaaggcaatgggacccta |
40544617 |
T |
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| Q |
276 |
tttctcattagctattcttgctttgcatggagaaaccagttctacttattcnnnnnnngagggaggtcaaccgatggctatctattgggatttctaataa |
375 |
Q |
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| T |
40544618 |
tttctgattagctattcttgctttgcatggagaaaccagttctacttattcaaaaaaagaggg--gtgagccgatggctatctattgggatttctaataa |
40544715 |
T |
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| Q |
376 |
tgggaatgttgtttctcatcttttcattattgatctttatcttgtctttgcttatataccgacagggttaccaatccaaaattttcctatatgattgata |
475 |
Q |
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| T |
40544716 |
tgggaatgttgtttctcatcttttcattattgatcattatcttgtctttgcttatataccgacagggttaccaatccaaaattttcctatatgattgata |
40544815 |
T |
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| Q |
476 |
tgaataacccaaggctagctggttgcgaagttgggattttaagtagatcaaggagaatgattttggctaagtttgtttttagcccatcattgtggattgg |
575 |
Q |
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| T |
40544816 |
tgaacaacccaaggctagctggttgcgaagttgggattttaagtagatcaaggggaatgattttggctaagtttgtttttagcccatcattgtggattgg |
40544915 |
T |
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| Q |
576 |
ctcctagcatgggttttgacttttgatgatgt |
607 |
Q |
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| T |
40544916 |
ctcctagtatgggttttgacttttgatgatgt |
40544947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 40543195 - 40543369
Alignment:
| Q |
16 |
attgatgatcaagaannnnnnngttacatgcatacaaagaaaggtaaatttccttttcttatgtgtaaaattgattttgataaggaatatgaaagtgtgt |
115 |
Q |
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| T |
40543195 |
attgatgatcaagaatttttttgttgcatgcatacaaagaaaggtaaatttccttttcttatgtgtaaaattgattttgataaggaatatgaaagtgtgt |
40543294 |
T |
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| Q |
116 |
actggaattttcaaagctcatgttgtcggaatttggtttttctcctattgtctttaatcttatcatgagttgcac |
190 |
Q |
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| T |
40543295 |
actggaatttccaaagctcatgttgtcggaatttggtttttctcctattgtctttaatcttatcatgagttgcac |
40543369 |
T |
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