View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16262_low_10 (Length: 257)
Name: NF16262_low_10
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21257106 - 21256963
Alignment:
| Q |
1 |
ataaaaaactggaatgaaaataaattagcttaaattttaaaatatataaactggtgttcaagttactttctatgtttccaaccnnnnnnnnnnntgtaag |
100 |
Q |
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| T |
21257106 |
ataaaaaattggaatgaaaataaattagcttaaattttaaaatatataaactggtgttcaagttactttctatgtttccaa-caaaaaaaaaaatggaag |
21257008 |
T |
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| Q |
101 |
ttactttctagactatttaaattagaaaattatcttgcagaaaga |
145 |
Q |
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| T |
21257007 |
ttactttctagactatttaaattagaaaattatcttgcagaaaga |
21256963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 21256915 - 21256867
Alignment:
| Q |
195 |
gagtatattgcaaaacactgctagtgtaaattaaagattagagcagatg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21256915 |
gagtatattgcaaaacactgctagtgtaaattaaagattagagcagatg |
21256867 |
T |
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