View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16262_low_3 (Length: 472)
Name: NF16262_low_3
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 41236960 - 41236501
Alignment:
| Q |
1 |
cgttgatatctgccttctgtggtgtgaacaacattgataaagccatgcaatattttgatgagatgttgagttctggatgctcaccggatgcaattgttta |
100 |
Q |
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| T |
41236960 |
cgttgatatctgccttctgtggagtgaacaacattgataaagccatgcaatattttgatgagatgttgagttctggatgctcaccggatgcaattgttta |
41236861 |
T |
|
| Q |
101 |
ctattgtttgatatctggtttaaccattgctggaaggatggatgatgctagtgttgttgtgtcgcagttgaaacgggctgggtttggccttgatagacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41236860 |
ctattgtttgatatctggtttaaccattgctggaaggatgggtgatgctagtgttgttgtgtcgcagttgaaacgggctgggtttggccttgatagacat |
41236761 |
T |
|
| Q |
201 |
tgctataatgttctcatcagtggattctgcaagaagaagaagctggagcgagtttatgaaatgctcaacgaaatggaagaaaatggagtcaagcccgaca |
300 |
Q |
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| T |
41236760 |
tgctataatgttctcatcagtggattctgcaagaagaagaagctggagcgagtttatgaaatgctcaacgaaatggaagaaaatggagtcaagcccgaca |
41236661 |
T |
|
| Q |
301 |
ttgtcacctataacactttggtttcttaccttggcaaagctggagattttgcaactgctaccaaggtaatgaaaaagatgattaaagagggtcttaagcc |
400 |
Q |
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| T |
41236660 |
ttgtcacctataacactttggtttcttaccttggcaaagctggagattttgcaactgctaccaaggtaatgaaaaagatgattaaagagggtcttaagcc |
41236561 |
T |
|
| Q |
401 |
ctctgttgtcacatatggggcagtcatacatgcatattgtttaaaaaagaacattgatga |
460 |
Q |
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| T |
41236560 |
ctctgttgtcacatatggggcagtcatacatgcatattgtttaaaaaagaacattgatga |
41236501 |
T |
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Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 40632756 - 40633191
Alignment:
| Q |
1 |
cgttgatatctgccttctgtggtgtgaacaacattgataaagccatgcaatattttgatgagatgttgagttctggatgctcaccggatgcaattgttta |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
40632756 |
cgttgatatctggtttctgtggtgtgaacaatattgttaaagccgtgcaatattttgatgagatgttgagttctggatgctcaccagatacaattgttta |
40632855 |
T |
|
| Q |
101 |
ctattgtttgatatctggtttaaccattgctggaaggatggatgatgctagtgttgttgtgtcgcagttgaaacgggctgggtttggccttgatagacat |
200 |
Q |
| |
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|||| ||||||||||| |||||||||||||| |||||||||| | |||| |||||||||| | |||| | || ||||||||| | |
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| T |
40632856 |
ctatagtttgatatctagtttaaccattgctagaaggatgga---------------tttgtcacagttgaaacaagttgggctgggtcttgatagaact |
40632940 |
T |
|
| Q |
201 |
tgctataatgttctcatcagtggattctgcaagaagaagaagctggagcgagtttatgaaatgctcaacgaaatggaagaaaatggagtcaagcccgaca |
300 |
Q |
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| T |
40632941 |
tgctactatgctcttttaagtggattccgtaagaagaagaagctagaacaagtatctgaaatgctcaacaagatggaagaaattgaagttaagcctgata |
40633040 |
T |
|
| Q |
301 |
ttgtcacctataacactttggtttcttaccttggcaaagctggagattttgcaactgctaccaaggtaatgaaaaagatgattaaagagggtcttaagcc |
400 |
Q |
| |
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|||||| || || ||||| |||||||||||||||||||||||||||| |||||| ||||||||| | |||||| |||||||| |||||||| || |||| |
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|
| T |
40633041 |
ctgtcacttacaatactttagtttcttaccttggcaaagctggagattctgcaaccgctaccaagatgatgaaagagatgattgaagagggttttgagcc |
40633140 |
T |
|
| Q |
401 |
ctctgttgtcacatatggggcagtcatacatgcatattgtttaaaaaagaa |
451 |
Q |
| |
|
|||||| || ||||||||||| | |||||||||||||||||||| ||||| |
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|
| T |
40633141 |
atctgttttcgcatatggggcaattatacatgcatattgtttaaagaagaa |
40633191 |
T |
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