View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16262_low_4 (Length: 453)
Name: NF16262_low_4
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 50112086 - 50112507
Alignment:
| Q |
14 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgt |
113 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
50112086 |
gaagtaaaaatcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatgt |
50112185 |
T |
|
| Q |
114 |
gcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggtat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50112186 |
gcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggtat |
50112285 |
T |
|
| Q |
214 |
acaaagtataaggatcattaggatacaactttatcccatgtggctgtgagttctctcccaaaccatacagagaagcatctttgggaagtttagtagaaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50112286 |
acaaagtataaggatcattaggatacaactttatcccatgtggctgtgagttctctcccaaaccatacagagaagcatctttgggaagtttagtagaaat |
50112385 |
T |
|
| Q |
314 |
ttccaagtattggtctttgaagaccaatggaccaaatgggtctgactcattagaattggagtcaaaaagagtatcaccattggacttccttttcactgca |
413 |
Q |
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| T |
50112386 |
ttccaagtattggtctttgaagaccaatggaccaaatgggtctgactcattagaattggagtcaaaaagagtatcaccattggacttccttttcactgca |
50112485 |
T |
|
| Q |
414 |
aagctaaatggatcagaagtgt |
435 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
50112486 |
aagctaaatggatcagaagtgt |
50112507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 50121667 - 50122088
Alignment:
| Q |
14 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121667 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgt |
50121766 |
T |
|
| Q |
114 |
gcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggtat |
213 |
Q |
| |
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|||| ||| || ||||| || |||||| |||||||||||||||||||| || ||||||| ||||| ||||| ||||| |||| || |||||| |||| |
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| T |
50121767 |
gcataaggttttccacc---ataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtat |
50121863 |
T |
|
| Q |
214 |
acaaagtataaggatcattaggatacaactttatcccatgtggctgtgagttctctcccaaaccatacagagaagcatctttgggaagtttagtagaaat |
313 |
Q |
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||||||| ||||||||||| |||| ||||| || |||| ||| |||| ||||||||| |||||||||| |||||||| |||||| | ||| |||||||| |
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| T |
50121864 |
acaaagtgtaaggatcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaat |
50121963 |
T |
|
| Q |
314 |
ttccaagtattggtctttgaagaccaatggaccaaatgggtctgactcattag---aattggagtcaaaaagagtatcaccattggacttccttttcact |
410 |
Q |
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||| |||||||||||||||||||| || |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121964 |
ttctaagtattggtctttgaagactaaaggacgaaatgagtctgactcattagaataattggagtcaaaaagagtatcaccattggacttccttttcact |
50122063 |
T |
|
| Q |
411 |
gcaaagctaaatggatcagaagtgt |
435 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
50122064 |
gcaaagctaaatggatcagaagtgt |
50122088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 23931117 - 23930776
Alignment:
| Q |
14 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgt |
113 |
Q |
| |
|
|||||||||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| ||||||||||| | |||| ||||| |
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| T |
23931117 |
gaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcatgt |
23931018 |
T |
|
| Q |
114 |
gcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggtat |
213 |
Q |
| |
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||| || || ||||| || |||||| |||||||| || | ||||||||| ||||||| ||||| || |||||||| |||| | ||| || |||| |
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| T |
23931017 |
gcagaagcttttccacc---attatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgttgtat |
23930921 |
T |
|
| Q |
214 |
acaaagtataaggatcattaggatacaactttatcccatgtggctgtgagttctctcccaaaccatacagagaagcatctttgggaagtttagtagaaat |
313 |
Q |
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| ||||||||||| ||| | ||||| || || ||||||||||| |||| ||||||||||||||||| | ||| |||||||| || | ||| || ||||| |
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| T |
23930920 |
ataaagtataagggtcacttggatataatttaatcccatgtggttgtgtattctctcccaaaccatataaagatgcatctttaggtaattttgttgaaat |
23930821 |
T |
|
| Q |
314 |
ttccaagtattggtctttgaagaccaatggaccaaatgggtctga |
358 |
Q |
| |
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|| | |||||||||||||| || | || || |||||||||||| |
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|
| T |
23930820 |
ctcaagatattggtctttgaaaacaagtgaactaaatgggtctga |
23930776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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