View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16262_low_5 (Length: 450)
Name: NF16262_low_5
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 41062727 - 41063153
Alignment:
| Q |
18 |
aggattttatctacacaaataacacaattgtaatatggaattgccataagatatataatactataatctatacaaataaataatttgttacttaagaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062727 |
aggattttatctacacaaataacacaattgtaatatggaattgccataagatatataatactataatctatacaaataaataatttgttacttaagaaat |
41062826 |
T |
|
| Q |
118 |
taagaggtttaataatcaatatgttgactatgaagatgatgatgattctatcaaaagttcacatgatcttgagaaactggaacaatgaactgctgctttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062827 |
taagaggtttaataatcaatatgttgactatgaagatgatgatgattctatcaaaagttcacatgatcttgagaaactggaacaatgaactgctgctttt |
41062926 |
T |
|
| Q |
218 |
ggattggtaataaccatgcctttatttggtttatccaaatcatcattttcatgcctaatctctttgagcattgctgttacatctttcatcgtaggtcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062927 |
ggattggtaataaccatgcctttatttggtttatccaaatcatcattttcatgcctaatctctttgagcattgctgttacatctttcatcgtaggtcttt |
41063026 |
T |
|
| Q |
318 |
cttctggtgatggattcacacagagaagagctacacctagcacttgaagcatctctggtgtttttgttccacactgtaataataattgctgatcaataat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41063027 |
cttctggtgatggattcacacagagaagagctacacctagcacttgaagcatctctggtgtttttgttccacactgtaataataattgctgatcaataat |
41063126 |
T |
|
| Q |
418 |
agatgtgaattcttttttcttctctct |
444 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41063127 |
agatgtgaattcttttttcttctctct |
41063153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University