View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16262_low_6 (Length: 374)
Name: NF16262_low_6
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 17879429 - 17879497
Alignment:
| Q |
17 |
cagtatttccaaaatcttagctaactaatactaccattcaaagatgacatacagtaaaatgtccatgct |
85 |
Q |
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| T |
17879429 |
cagtatttccaaaatcttagctaactaatactaccattcaaagatgacatacagtaaaatgtccatgct |
17879497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 15047253 - 15047347
Alignment:
| Q |
271 |
aagtcataattccaaaacctgacattcaccacattaaatatctatttatctaacccatccaacaattatttaaaacaatatgcatgcagaattat |
365 |
Q |
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| T |
15047253 |
aagtcataattccaagacatgccattcaccacattagatatctatttatctaatccatccaacaattatttatatcaatatgcatgtagaattat |
15047347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 17879560 - 17879609
Alignment:
| Q |
316 |
ttatctaacccatccaacaattatttaaaacaatatgcatgcagaattat |
365 |
Q |
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| T |
17879560 |
ttatctaaccaatccaacaattatttaaaacaatatgcatgtagaattat |
17879609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 15014517 - 15014577
Alignment:
| Q |
296 |
tcaccacattaaatatctatttatctaacccatccaacaattatttaaaacaatatgcatg |
356 |
Q |
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| T |
15014517 |
tcaccacgataaatatctatttatctaacccatccagcagttatgtacagcaatatgcatg |
15014577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 14773115 - 14773173
Alignment:
| Q |
298 |
accacattaaatatctatttatctaacccatccaacaattatttaaaacaatatgcatg |
356 |
Q |
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| T |
14773115 |
accacataaaatatctatttatctaacccatcaaacaatgaagtacatcaatatgcatg |
14773173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 15046916 - 15046966
Alignment:
| Q |
128 |
ttaaactagctgtcaatctgcttaatcaaatgttaatctgaagattaaagc |
178 |
Q |
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| T |
15046916 |
ttaaactacctttcaatctgcttaattaaatgtcaatctgaagatcaaagc |
15046966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 54157140 - 54157236
Alignment:
| Q |
257 |
aaaaagtttgaatgaagtcataattccaaaacctgacattcaccacattaaatatctatttatctaacccatccaacaattatttaaaacaatatgca |
354 |
Q |
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| T |
54157140 |
aaaaagtttggatgaaatcataataacaagatgtgtcattcaccacattaaatagctatttatctaa-ccatccaacaattatgtaaagcaatatgca |
54157236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 53869166 - 53869107
Alignment:
| Q |
292 |
acattcaccacattaaatatctatttatctaacccatccaacaattatttaaaacaatatg |
352 |
Q |
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| T |
53869166 |
acattcaccacattaaatagctatttatttaa-ccatcaaacaattatctacagcaatatg |
53869107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 36877571 - 36877492
Alignment:
| Q |
130 |
aaactagctgtcaatctgcttaatcaaatgttaatctgaagattaaagcatacatatacacaaactactacatgctatataa |
211 |
Q |
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| T |
36877571 |
aaactagttttcaatcagcttaatcaaatttcaatttaaagattaaagcat--atatacatagactactgcatgctatataa |
36877492 |
T |
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