View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16262_low_9 (Length: 272)
Name: NF16262_low_9
Description: NF16262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16262_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 51735467 - 51735705
Alignment:
| Q |
19 |
atcctaaagtagaatttctcatgtcagaggctaatgaagataaaacaaatggagatttcaaagaaatgggacataggctagctcaggaagttatttcttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51735467 |
atcctaaagtagaatttctcatgtcagaggctaatgaagataaaacaaatggagatttcaaagaaatgggacataggctagctcaggaagttatttcttt |
51735566 |
T |
|
| Q |
119 |
tgttaaaagcaaaatggacaaagtaacaagatacgggaaactgggagatattaagctaagttttgttggacattcaatgggtaatctcattataagaaca |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51735567 |
tgttaaaagcaaaatggacagagtaacaagatacgggaaactgggagatattaagctaagttttgttggacattcaatgggtaatctcattataagaaca |
51735666 |
T |
|
| Q |
219 |
gcgatagccggtaagttattttaattgaatagaagagat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51735667 |
gcgatagccggtaagttattttaattgaatagaagagat |
51735705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 356911 - 357115
Alignment:
| Q |
27 |
gtagaatttctcatgtcagaggctaatgaagataaaacaaatggagatttcaaagaaatgggacataggctagctcaggaagttatttcttttgttaaaa |
126 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||||||| || || |||| ||||||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
356911 |
gtagaagttctgatgtcacaggctaatgaagataaaacatcgggtgacttcagagaaatgggtcaaaggctagcgcaggaagttatttcctttgttaaaa |
357010 |
T |
|
| Q |
127 |
gcaaaatggacaaagtaacaagatacgggaaactgggagatattaagctaagttttgttggacattcaatgggtaatctcattataagaacagcgatagc |
226 |
Q |
| |
|
|||||||| |||| | |||||| || || ||| | ||||||| || ||||||||||||||||| || || || ||||||||||||||||| ||||| |
|
|
| T |
357011 |
agaaaatggataaagaatcaagatgtggaaatctgagggatattagactgagttttgttggacattctattggcaacctcattataagaacagcaatagc |
357110 |
T |
|
| Q |
227 |
cggta |
231 |
Q |
| |
|
|||| |
|
|
| T |
357111 |
tggta |
357115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 37849180 - 37849072
Alignment:
| Q |
33 |
tttctcatgtcagaggctaatgaagataaaacaaatggagatttcaaagaaatgggacataggctagctcaggaagttatttcttttgttaaaagcaaaa |
132 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| ||| || |||| ||||||||| | |||| ||||||||||| || ||||| | ||||| |||| |
|
|
| T |
37849180 |
tttctaatgtcagaggcaaatgaagagaaaacatctggcgacttcagagaaatgggttttcggcttgctcaggaagtgatctctttcctaaaaaggaaaa |
37849081 |
T |
|
| Q |
133 |
tggacaaag |
141 |
Q |
| |
|
|||| |||| |
|
|
| T |
37849080 |
tggataaag |
37849072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University