View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16263_low_1 (Length: 617)
Name: NF16263_low_1
Description: NF16263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16263_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 20 - 605
Target Start/End: Original strand, 13224332 - 13224917
Alignment:
| Q |
20 |
accagcaagacccaatttggtgttcttggagaggaatcaattgccacccaaaaacagctcaaattacttcccttaacctctctaacctcaacctttcagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13224332 |
accagcaagacccaatttggtgttcttggacaggaatcaattgccacccaaaaacagctcaaattacttcccttaatctctctaacctcaacctttcagg |
13224431 |
T |
|
| Q |
120 |
cataatctcgcccaaaatccgctacttaactacgttaactcacttgaacattagtggaaatgacttcaatggaacattccaaacagcaatttttcaactc |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13224432 |
cataatctcgcccaaaatccgctacttaactacgttaactcacttgaacattagtggaaatgacttcaatggaactttccaaacagcaatttttcaactc |
13224531 |
T |
|
| Q |
220 |
actgagcttagaacactggacattagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttaca |
319 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13224532 |
aatgagcttagaacactggacatcagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttaca |
13224631 |
T |
|
| Q |
320 |
gtaacagtttcgtaggccctctccccgaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggcaaaatccctca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13224632 |
gtaacagtttcgtaggccctctccccgaagaatttatcaggctaccttttttagaacaccttaacctcggtggaagctacttcagtggcaaaatccctca |
13224731 |
T |
|
| Q |
420 |
aagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttgcaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13224732 |
aagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttacaa |
13224831 |
T |
|
| Q |
520 |
cgcttggaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
605 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13224832 |
cgcttggaaatcggatacaactcctactcaggagcaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
13224917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 605
Target Start/End: Complemental strand, 13149441 - 13148856
Alignment:
| Q |
20 |
accagcaagacccaatttggtgttcttggagaggaatcaattgccacccaaaaacagctcaaattacttcccttaacctctctaacctcaacctttcagg |
119 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||| | ||||| | ||| || ||||||||||||||||| ||||||| |
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|
| T |
13149441 |
accaccaagacccagtttggtgttcttggagaggcatcacttgccacccaaaaacaacacaaatcatttcactaaacctctctaacctcaaattttcagg |
13149342 |
T |
|
| Q |
120 |
cataatctcgcccaaaatccgctacttaactacgttaactcacttgaacattagtggaaatgacttcaatggaacattccaaacagcaatttttcaactc |
219 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
13149341 |
cataatctcaccccaaatccgttacttaacaaccttaacccacttgaacataagtggaaatgacttcaatggaactttccaaacagcaattttccaactc |
13149242 |
T |
|
| Q |
220 |
actgagcttagaacactggacattagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttaca |
319 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| | | ||| |||||| ||| ||||| |||| |
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|
| T |
13149241 |
ggtgaacttagaacactagacattagccataactctttcaactcaacttttccacctggaatttcgaagttaatatttttaagaacctttaatgcataca |
13149142 |
T |
|
| Q |
320 |
gtaacagtttcgtaggccctctccccgaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggcaaaatccctca |
419 |
Q |
| |
|
| ||||||||| |||||||| || |||||| | |||||||| || ||||||||| | || | ||| |||||||||||||||| ||| | |||||| | |
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|
| T |
13149141 |
gcaacagtttcactggccctcttcctgaagaactaatcaggcttccatttctagaaaagctcagccttggtggaagctacttcaatggaagaatcccacc |
13149042 |
T |
|
| Q |
420 |
aagttatggaactttcaaaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttgcaa |
519 |
Q |
| |
|
||| ||||||| ||||||||||||||| || || |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| |
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|
| T |
13149041 |
aagctatggaaatttcaaaagactcaagttcctagatttagctggtaatgcattggaaggcacactaccacctgaactaggcttattatcagagctacaa |
13148942 |
T |
|
| Q |
520 |
cgcttggaaatcggatacaactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
605 |
Q |
| |
|
| || ||||| ||||||||| | || ||||||||| ||||||| ||| |||||||||||| || ||| || ||||| || ||||| |
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|
| T |
13148941 |
catttagaaattggatacaacacatattcaggaacactaccagttgaactaacaatgttgtgtagtctaaaatacttagacatctc |
13148856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 37 - 605
Target Start/End: Complemental strand, 13316019 - 13315451
Alignment:
| Q |
37 |
tggtgttcttggagaggaatcaattgccacccaaaaacagctcaaattacttcccttaacctctctaacctcaacctttcaggcataatctcgcccaaaa |
136 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
13316019 |
tggtgttcttggagaggaatcagttgccacccaaaaacaacacaaattacttccctaaacctctctaacctcaaccttacaggcataatctcgctcaaaa |
13315920 |
T |
|
| Q |
137 |
tccgctacttaactacgttaactcacttgaacattagtggaaatgacttcaatggaacattccaaacagcaatttttcaactcactgagcttagaacact |
236 |
Q |
| |
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||||| || |||| || |||||||||||| |||| ||||||||||||||||||||| || ||| |||||||||| |||||||| |||||| |||||| |
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| T |
13315919 |
tccgccacctaaccaccttaactcacttggacataagtggaaatgacttcaatggatgttttcaagcagcaattttccaactcacagagcttgtaacact |
13315820 |
T |
|
| Q |
237 |
ggacattagccataactcattcaactcaactttcccacctggaatttcaaagcttagattcttaagagtcttcaatgcttacagtaacagtttcgtaggc |
336 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||| |||||||| || || | ||| ||||| |
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|
| T |
13315819 |
agacataagccataactcattcaactcaactttcccaaagggaatttcaaaactaagattcttaagaatctttaatgcttatagcaataacttcataggc |
13315720 |
T |
|
| Q |
337 |
cctctccccgaagaatttatcaggctaccttttctagaacaccttaacctcggtggaagctacttcagtggcaaaatccctcaaagttatggaactttca |
436 |
Q |
| |
|
||||| || |||||| | | | | | || |||||||| | || ||||| |||| ||||| |||| ||||| |||||| ||||||||||| || |
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|
| T |
13315719 |
cctcttcctgaagaactcaccggatttccatttctagagaagctcaaccttggtgagagctatttcaatggcacaatcccagcaagttatggaaactttg |
13315620 |
T |
|
| Q |
437 |
aaagactcaaatttctttatttggctggtaatgcattggaaggttcactaccacctcaactaggcttattatcagagttgcaacgcttggaaatcggata |
536 |
Q |
| |
|
||||||| || || || ||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| ||||| |
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|
| T |
13315619 |
aaagactaaagttcctctatttagctggtaatgcattggaaggttctgtaccacctgaactagggttattatcagagttgcaacatttggaaattggata |
13315520 |
T |
|
| Q |
537 |
caactcgtactcaggaacaataccagtggaattaacaatgttgtctaatctcaagtacttggatatctc |
605 |
Q |
| |
|
|||| | ||||||||| |||||||||||||||| ||||||||||||||||| ||||| || ||||| |
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|
| T |
13315519 |
caacaaattttcaggaacactaccagtggaattaacgatgttgtctaatctcaaatacttagacatctc |
13315451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 40347666 - 40347570
Alignment:
| Q |
32 |
caatttggtgttcttggagaggaatcaattgccacccaaaaacagctcaaattacttcccttaacctctctaacctcaacctttcaggcataatctc |
128 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| |||| | ||||||| ||||| ||||| || |||| ||||| |||||||||| || |||||||||| |
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|
| T |
40347666 |
caatttggtgttctcggagaggcatcacttgtcacctataaacagcccaaatcacttctctaaacccctctagcctcaaccttacatgcataatctc |
40347570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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