View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_high_10 (Length: 370)
Name: NF16264_high_10
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 52 - 365
Target Start/End: Original strand, 14741920 - 14742232
Alignment:
| Q |
52 |
attctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataa |
151 |
Q |
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| T |
14741920 |
attctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataa |
14742019 |
T |
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| Q |
152 |
gttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattc |
251 |
Q |
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| T |
14742020 |
gttaatcttctgatatatttcttatgataaccatacaa-tattaaatttgaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattc |
14742118 |
T |
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| Q |
252 |
tctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagcattctcc |
351 |
Q |
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| T |
14742119 |
tctagtcttgtttgcataagtggcttctagagcaagcttattactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagcattctcc |
14742218 |
T |
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| Q |
352 |
cagcctttgcttct |
365 |
Q |
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| T |
14742219 |
ctgcctttgtttct |
14742232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 52 - 308
Target Start/End: Original strand, 14734945 - 14735200
Alignment:
| Q |
52 |
attctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataa |
151 |
Q |
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| T |
14734945 |
attctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatcttggacaagtagagcaacaaaaattaaatgcataa |
14735044 |
T |
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| Q |
152 |
gttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattc |
251 |
Q |
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| T |
14735045 |
gttaatcttctgatatatttcttatgataaccatacaa-tataaaatttaaacacaactctgcaaaacaaaaatgatgaaccaacctcagtacttaattc |
14735143 |
T |
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| Q |
252 |
tctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
308 |
Q |
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| T |
14735144 |
tctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 14998613 - 14998525
Alignment:
| Q |
56 |
tttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
144 |
Q |
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|||||| |||||||||| |||||| | |||||||||||||| |||||||| | |||| || |||||||| | |||||||| ||||| |
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| T |
14998613 |
tttcacaaacctgcactttgcaattgcttttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaa |
14998525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 294
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
64 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
163 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
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| Q |
164 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
262 |
Q |
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| ||| ||||| | | ||||| | |||| | |||||||||| || || || |||||| |||||||||||||||| |||||||| |||||| | | |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
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| Q |
263 |
ttgcataagtggcttctagagcaagcttttta |
294 |
Q |
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| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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