View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16264_high_11 (Length: 360)
Name: NF16264_high_11
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 31264440 - 31264104
Alignment:
| Q |
18 |
caattctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatacgttaacatggccata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31264440 |
caattctcagtcccaaacatgaatgaataccatagagaatgagaatactgcatgtaagagtctagacgtcctaggaaaattatacgttaacatggccata |
31264341 |
T |
|
| Q |
117 |
gaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcagatgcaaat |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31264340 |
gaagaccaaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcaaatgcaaat |
31264241 |
T |
|
| Q |
217 |
ttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatttatccgataagtaataat |
316 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31264240 |
ttgtcgcaacagaagtctgaattcaaggaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatttatccgatgagtaataat |
31264141 |
T |
|
| Q |
317 |
ttatatttatggatctcaatgttatgacttcatctca |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264140 |
ttatatttatggatctcaatgttatgacttcatctca |
31264104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 22049600 - 22049815
Alignment:
| Q |
20 |
attctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatacgttaacatggccataga |
118 |
Q |
| |
|
||||||| || |||||||||| |||| | ||||||||| || ||| ||||| |||||||| ||||| | ||||| | |||| |||| ||||| ||| |
|
|
| T |
22049600 |
attctcattcgcaaacatgaaccaatatcgtagagaatgggaataccgcatggaagagtctgcacgtcttgggcaatctttacgccaacaaggccaaaga |
22049699 |
T |
|
| Q |
119 |
agacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcagatgcaaattt |
218 |
Q |
| |
|
| ||| |||||||||||||||||| || ||||||||||| |||| |||||| |||| ||| |||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
22049700 |
aaaccaaaacaacgttcatcagaaatcacaagaggcagtaatgaatcgctcgaactggtcattaacatcatacgcaacaagaacaatcagatgcaaattc |
22049799 |
T |
|
| Q |
219 |
gtctcaacagaagtct |
234 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
22049800 |
gtctcaacagatgtct |
22049815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 22145025 - 22144698
Alignment:
| Q |
20 |
attctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatacgttaacatggccataga |
118 |
Q |
| |
|
||||||| || |||||||||| |||| | |||||| || || ||| ||||| |||||||| ||||| ||||||| | ||||| |||| ||||| ||| |
|
|
| T |
22145025 |
attctcactcgcaaacatgaaccaatatcgtagagagtgggaataccgcatggaagagtctgcacgtcttaggcaatctttacgtcaacaaggccaaaga |
22144926 |
T |
|
| Q |
119 |
agacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcagatgcaaattt |
218 |
Q |
| |
|
||||| |||||||||||||||||| || |||||| |||||||||||||||| |||| | | |||| |||||||| || |||||| ||||||||||||| |
|
|
| T |
22144925 |
agaccaaaacaacgttcatcagaaatcacaagagacagtgatgagtcgctcgaactggccattaacatcatacgcaacgagaacaatcagatgcaaattc |
22144826 |
T |
|
| Q |
219 |
gtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaatttatccgataagtaataatt |
317 |
Q |
| |
|
||||||||| | |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
22144825 |
gtctcaacaaatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggacagatggtgatttatccgatgagtaataatt |
22144726 |
T |
|
| Q |
318 |
tatatttatggatctcaatgttatgact |
345 |
Q |
| |
|
||||||||||| || ||||||||||||| |
|
|
| T |
22144725 |
tatatttatggttcgcaatgttatgact |
22144698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 12212842 - 12212515
Alignment:
| Q |
20 |
attctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatacgttaacatggccataga |
118 |
Q |
| |
|
||||||| || |||||||||| |||| | ||||||||| || ||| ||||| |||||||| ||||| |||| || | ||| | |||| ||||| || |
|
|
| T |
12212842 |
attctcactcgcaaacatgaaccaatatcgtagagaatgggaataccgcatggaagagtctgcacgtcttaggaaatctttacctcaacaaggccaaagt |
12212743 |
T |
|
| Q |
119 |
agacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcagatgcaaattt |
218 |
Q |
| |
|
||||| |||||| ||||||||||| || |||||| | || ||||||||||| |||| | | ||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
12212742 |
agaccaaaacaatgttcatcagaaatcacaagagacggtaatgagtcgctcgaactggccattaatatcatacgcaacgagaacaatcagatgcaaattc |
12212643 |
T |
|
| Q |
219 |
gtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaatttatccgataagtaataatt |
317 |
Q |
| |
|
||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| | || ||||| | ||||||||||| |||||||||| |
|
|
| T |
12212642 |
gtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactagacagatgatgatttatccgatgagtaataatt |
12212543 |
T |
|
| Q |
318 |
tatatttatggatctcaatgttatgact |
345 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
12212542 |
tatatttatggttctcaatgttatgact |
12212515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 13814750 - 13815076
Alignment:
| Q |
20 |
attctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatacgttaacatggccataga |
118 |
Q |
| |
|
||||||| || |||||||||| |||| | ||||||||| || ||| |||| |||||||| ||||| ||||||| | ||||| |||| ||||| ||| |
|
|
| T |
13814750 |
attctcactcgcaaacatgaaccaatatcgtagagaatgggaataccacatggaagagtctgcacgtcttaggcaatctttacgtcaacaaggccaaaga |
13814849 |
T |
|
| Q |
119 |
agacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcagatgcaaattt |
218 |
Q |
| |
|
||||| ||||||||||||| | || || |||||| |||| ||||||||||| |||| | | ||| |||||||| || |||||| ||||||||||||| |
|
|
| T |
13814850 |
agaccaaaacaacgttcataaaaa-tcacaagagacagtaatgagtcgctcgaactggccactaacatcatacgcaacgagaacaatcagatgcaaattc |
13814948 |
T |
|
| Q |
219 |
gtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaatttatccgataagtaataatt |
317 |
Q |
| |
|
||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
13814949 |
gtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggatagatggtgatttatctgatgagtaataatt |
13815048 |
T |
|
| Q |
318 |
tatatttatggatctcaatgttatgact |
345 |
Q |
| |
|
|||| |||||| ||||| |||||||||| |
|
|
| T |
13815049 |
tatacttatggttctcagtgttatgact |
13815076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 44359985 - 44360200
Alignment:
| Q |
20 |
attctcagtcccaaacatgaatgaataccatagagaatgaga-tactgcatgtaagagtctagacgtcctaggcaaattatacgttaacatggccataga |
118 |
Q |
| |
|
||||||| || |||||||||| |||| | ||||||||| || ||| ||||| |||||||| ||||| | ||||| | |||| |||| ||||| ||| |
|
|
| T |
44359985 |
attctcattcgcaaacatgaaccaatatcgtagagaatgggaataccgcatggaagagtctgcacgtcttgggcaatctttacgccaacaaggccaaaga |
44360084 |
T |
|
| Q |
119 |
agacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaactagtcgttaatatcatacgtgacaagaacactcagatgcaaattt |
218 |
Q |
| |
|
| ||| |||||||||||||||||| || ||||||||||| |||| |||||| |||| ||| |||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
44360085 |
aaaccaaaacaacgttcatcagaaatcacaagaggcagtaatgaatcgctcgaactggtcattaacatcatacgcaacaagaacaatcagatgcaaattc |
44360184 |
T |
|
| Q |
219 |
gtctcaacagaagtct |
234 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
44360185 |
gtctcaacagatgtct |
44360200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 15850956 - 15851109
Alignment:
| Q |
75 |
agtctagacgtcctaggcaaattatacgttaacatggccatagaagacccaaacaacgttcatcagaagtcccaagaggcagtgatgagtcgctcaaact |
174 |
Q |
| |
|
|||||| ||||| |||| ||| | ||||| |||| ||||| |||||||| ||||||||||||| |||||| |||| || |||| ||||||||||| |||| |
|
|
| T |
15850956 |
agtctacacgtcttaggaaaactttacgtcaacaaggccaaagaagaccaaaacaacgttcataagaagttccaaaagacagtaatgagtcgctcgaact |
15851055 |
T |
|
| Q |
175 |
agtcgttaatatcatacgtgacaagaacactcagatgcaaatttgtctcaacag |
228 |
Q |
| |
|
| |||| ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15851056 |
caccattaacatcatacacaacaagaacaatcagatgcaaatttgtctcaacag |
15851109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University