View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16264_high_12 (Length: 334)

Name: NF16264_high_12
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16264_high_12
NF16264_high_12
[»] chr6 (2 HSPs)
chr6 (90-214)||(893309-893434)
chr6 (1-64)||(893441-893504)
[»] scaffold0179 (1 HSPs)
scaffold0179 (123-231)||(23974-24082)
[»] chr1 (2 HSPs)
chr1 (131-183)||(51092895-51092947)
chr1 (9-56)||(51092751-51092798)
[»] chr4 (1 HSPs)
chr4 (9-57)||(2826892-2826940)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 893434 - 893309
Alignment:
Q  90 gaagtacggatgagagccgctacaatnnnnnnn-gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa 188  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  893434 gaagtacggatgagagccgctacaataaaaaaaagacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa 893335  T
Q  189 cagtgaaatagcagttgacatgtacc 214  Q
    ||||||||||||||||||||||||||    
T  893334 cagtgaaatagcagttgacatgtacc 893309  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 893504 - 893441
Alignment:
Q  1 tcaattaattttaataatgttattgttatttcatttgtttattttctccattcatcagtaatag 64  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  893504 tcaattaattttaataatgtcattgttatttcatttgtttatttgctccattcatcagtaatag 893441  T

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Target: scaffold0179 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 23974 - 24082
Alignment:
Q  123 gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaacagtgaaatagcagttgacatgtaccatggtgta 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||| |||||||||| | || ||||||| |||||||||||||||||||||||||    
T  23974 gacgggagaaaagagagtaaaggttgtgatggaaacggtgcatcaaaccgacgcaaggccaacaaaaagtgaaagagcagttgacatgtaccatggtgta 24073  T
Q  223 ggcaggacc 231  Q
    |||||||||    
T  24074 ggcaggacc 24082  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 51092895 - 51092947
Alignment:
Q  131 aaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggcca 183  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||| ||||||    
T  51092895 aaaagagatgaaaggttgtgatggaaacagtgcatcaggccggcgcgaggcca 51092947  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 51092751 - 51092798
Alignment:
Q  9 ttttaataatgttattgttatttcatttgtttattttctccattcatc 56  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||    
T  51092751 ttttaataatgttactgttatctcatttgtttatttgctccattcatc 51092798  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2826892 - 2826940
Alignment:
Q  9 ttttaataatgttattgttatttcatttgtttattttctccattcatca 57  Q
    ||||||||||||||||||||| | ||||||||||||  | |||||||||    
T  2826892 ttttaataatgttattgttatcttatttgtttatttgattcattcatca 2826940  T

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