View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_high_19 (Length: 295)
Name: NF16264_high_19
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 46130337 - 46130067
Alignment:
| Q |
11 |
cagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttca |
110 |
Q |
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| T |
46130337 |
cagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttca |
46130238 |
T |
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| Q |
111 |
atacatgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaag |
210 |
Q |
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| T |
46130237 |
atacatgagacattgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaag |
46130138 |
T |
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| Q |
211 |
acatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgt |
281 |
Q |
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| T |
46130137 |
acatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgt |
46130067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 46124325 - 46124058
Alignment:
| Q |
14 |
agacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaata |
113 |
Q |
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| T |
46124325 |
agacaatagtggagaaagtgcaccatgatttaaaacaatatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaata |
46124226 |
T |
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| Q |
114 |
catgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagaca |
213 |
Q |
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| T |
46124225 |
catgagacattgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagaca |
46124126 |
T |
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| Q |
214 |
tcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgt |
281 |
Q |
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| T |
46124125 |
tcacctgttctttgccgtcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgt |
46124058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 46703121 - 46702851
Alignment:
| Q |
11 |
cagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttca |
110 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| |||| | |||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
46703121 |
cagagacaataatggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttca |
46703022 |
T |
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| Q |
111 |
atacatgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaag |
210 |
Q |
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| T |
46703021 |
atacatgagacattgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaag |
46702922 |
T |
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| Q |
211 |
acatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgt |
281 |
Q |
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| T |
46702921 |
acatcacctgttctttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgt |
46702851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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