View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16264_high_2 (Length: 611)
Name: NF16264_high_2
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_high_2 |
 | |
|
| [»] scaffold0121 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Complemental strand, 39706355 - 39705778
Alignment:
| Q |
18 |
tactgaacatattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39706355 |
tactgaacatattattacaccatattattgaagccatggtgaggcatcatcaatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaa |
39706256 |
T |
|
| Q |
118 |
tttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39706255 |
tttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgaat |
39706156 |
T |
|
| Q |
218 |
agtagcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaa |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39706155 |
agtagcatgctgaattacaagtttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcataccatcagccggacaagcccaccaa |
39706056 |
T |
|
| Q |
318 |
aacttagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39706055 |
aacttagcctgggtttccttgtgcaaattgctcagctcatcaccaatcttcttctcagcctccagtgtgctgttgatttgagtcagctgagcattgagtt |
39705956 |
T |
|
| Q |
418 |
cacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagatt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39705955 |
cacgcacgttggcgttgcggtgagcctcaatgaattgcacggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagatt |
39705856 |
T |
|
| Q |
518 |
aggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39705855 |
aggatgaccaaaggaaaatacctttccactagttgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
39705778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 234 - 595
Target Start/End: Complemental strand, 11620330 - 11619969
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||||||||||||| |||||||||| | |||| | |||| |||||||||||| | || || || |
|
|
| T |
11620330 |
acaagtttcttaagctcatccagagccttcttgaataattcaagttgggccctattcatcccatcaacgggaccagcccaccaaaattgagtctcagtcg |
11620231 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctg-ttgatttgagtcagctgagcattgagttcacgcacgttggcgt |
432 |
Q |
| |
|
|||||||||| ||||| ||||| ||| || ||||||||| |||||| |||| ||||| ||||||| |||| |||||| || | |||| |||| |
|
|
| T |
11620230 |
ccttgtgcaagttgctcagctcttcagcacgtttcttctcgatgtccagta-gctggttgatctgagtcacctgaatattgagctcgcacacgctggcac |
11620132 |
T |
|
| Q |
433 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
532 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| || |
|
|
| T |
11620131 |
tacggtgagcctcaatgaattgcatggtaccattgttttggggtgggacccgagagagataacgatctatgaccgtatcaacattggggtggccaaatga |
11620032 |
T |
|
| Q |
533 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
11620031 |
aaataccttctctctaggtgagaaaacaacaagagcaacatctgcaccacagagggtgcaaag |
11619969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 595
Target Start/End: Complemental strand, 33238474 - 33238347
Alignment:
| Q |
468 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
567 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||||||||||| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
33238474 |
ttttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagag |
33238375 |
T |
|
| Q |
568 |
cagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|| || ||||||||||||||| ||||| |
|
|
| T |
33238374 |
caatatatgcaccacaaagggtacaaag |
33238347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 595
Target Start/End: Complemental strand, 33246395 - 33246268
Alignment:
| Q |
468 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
567 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||||||||||| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
33246395 |
ttttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagag |
33246296 |
T |
|
| Q |
568 |
cagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|| || ||||||||||||||| ||||| |
|
|
| T |
33246295 |
caatatatgcaccacaaagggtacaaag |
33246268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 11620493 - 11620351
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||| ||||| ||| ||| |||| ||||||||| ||||||||| ||||| |||| |||||||||||| ||||| ||||| ||| ||| ||| |
|
|
| T |
11620493 |
ttgcaacattgggttctgataaaactgtgctggaaacatatgagcttgtggaggatttggttgatgatggagaggcatgttggaggacgaactgtttcca |
11620394 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
||||| | ||||| |||||||||| |||| ||| ||||||| |
|
|
| T |
11620393 |
gcaaaatacggaagggtttgagtaggagcaccctggattacaa |
11620351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 22 - 595
Target Start/End: Complemental strand, 49064244 - 49063671
Alignment:
| Q |
22 |
gaacatattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaatttg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
49064244 |
gaacatattattacaccatattattgaagacatggtgaggaatcatcgagccatcaaagaaatgagtttgcaattgcaacatagcgttttgaaaaatttg |
49064145 |
T |
|
| Q |
122 |
tggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagtagta |
221 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |
|
|
| T |
49064144 |
tggcggaaacatttcagcttgttgaggatttggttgatgatggagataaatgttcgaggatgaagtgttgccaacaaaaaatggaagagttcgagtagca |
49064045 |
T |
|
| Q |
222 |
gcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaact |
321 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| | |||| | ||||||||||||||||| |
|
|
| T |
49064044 |
gcatgctgaattacaagtttcttaagctcctccaaagctttcttaaatatttcaagttgatccctattcatcccatcaacaacacaagcccaccaaaact |
49063945 |
T |
|
| Q |
322 |
tagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacg |
421 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
49063944 |
tagcctcagtttccttgtgcaaattgctcagctcatcaccaatcttcttctcggcatccaacgtgttattgatttgagtcagctgagcattgagttcacg |
49063845 |
T |
|
| Q |
422 |
cacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattagga |
521 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | |||||||| ||||| |||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
49063844 |
cacgttggcattgcggtgagcctcaatgaattgcatggtgccatcgttttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattgggg |
49063745 |
T |
|
| Q |
522 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49063744 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcaacatctgcaccacaaagggtgcaaag |
49063671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 22 - 595
Target Start/End: Complemental strand, 49049192 - 49048619
Alignment:
| Q |
22 |
gaacatattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaatttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49049192 |
gaacatattattacaccatattattgaagccatggtgaggcatcattgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaaattg |
49049093 |
T |
|
| Q |
122 |
tggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagtagta |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||| ||| |
|
|
| T |
49049092 |
tggtggcaacatttcagcttgttgagcatttggctgatgatggagataaacgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttgta |
49048993 |
T |
|
| Q |
222 |
gcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaact |
321 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||| | |
|
|
| T |
49048992 |
gcatgttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatctttattcattccatcaaccggacaagcccaccaaaaat |
49048893 |
T |
|
| Q |
322 |
tagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacg |
421 |
Q |
| |
|
|||||| ||||||||| | |||| ||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
49048892 |
tagcctctgtttccttgagaaaatggctcagctcatcgccaatcttcttctcggcatccaacgtgttgttgatttgagtcatctgagcattgagttcacg |
49048793 |
T |
|
| Q |
422 |
cacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattagga |
521 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49048792 |
aacgttggcattgcggtgagcctcaatgagttgcatggtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattgggg |
49048693 |
T |
|
| Q |
522 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49048692 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
49048619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 239 - 595
Target Start/End: Original strand, 47840574 - 47840930
Alignment:
| Q |
239 |
tttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttg |
338 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| |||||||||| | |||| | |||| |||||||||||| | | ||| ||| |||| |
|
|
| T |
47840574 |
tttcttaacctcccccaaagccttcttgaataattcaagttggaccctattcatcccatcaacgggaccagcccaccaaaattgatcctcggtcgtcttg |
47840673 |
T |
|
| Q |
339 |
tgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggt |
438 |
Q |
| |
|
|||| | || ||||| ||| || ||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||| || ||| |||||| |
|
|
| T |
47840674 |
cgcaagtgactcagctcttcagcacgtttcttctcgatgtccagtaggtggttgatctgagtcagctgagtattgagctcacgcacattagcgctgcggt |
47840773 |
T |
|
| Q |
439 |
gagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatac |
538 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| || |||| ||||| || |||||||||||||||| ||| || |||||||| |||||||| |
|
|
| T |
47840774 |
gagcctcaatgaattgcatggtaccgttgttttgtggtggcactcgagagagataacgatctatgaccgtatcaacattggggtgaccaaatgaaaatac |
47840873 |
T |
|
| Q |
539 |
ctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
||| | | ||||||||| |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
47840874 |
cttctccccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaag |
47840930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 248 - 595
Target Start/End: Original strand, 47830499 - 47830846
Alignment:
| Q |
248 |
ctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattg |
347 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| | |||||||| | |||| | |||| |||||||||||||| | || ||| ||||| |||| ||| |
|
|
| T |
47830499 |
ctcctccaaagcctttttgaaaaattcaagttgggctctattcatcccatcaacaggaccagcccaccaaaactgactctcggtcgccttgcgcaagttg |
47830598 |
T |
|
| Q |
348 |
cttagctcatcaccaatcttcttctcggcatccagtgtgctg-ttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctca |
446 |
Q |
| |
|
|| ||| | ||| || |||||||| |||||| |||| ||||| ||||||||||||| |||||| || |||| ||||||| | |||||||||||| |
|
|
| T |
47830599 |
ctcagcccttcagcacgtttcttctccatgtccagta-gctggttgatctgagtcagctgagtattgagctcgcgcaagttggcgctacggtgagcctca |
47830697 |
T |
|
| Q |
447 |
atgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccac |
546 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| ||||| ||||| | | |
|
|
| T |
47830698 |
atgaattgcatggtaccattgttttggggtgggactcgagagagataacgatctatgaccgtatcaacattgggttggccaaatgaaaacaccttctctc |
47830797 |
T |
|
| Q |
547 |
taggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || || |||||||| |
|
|
| T |
47830798 |
caggtgagaatacaacgagagcaacatctgcaccgcagagagtgcaaag |
47830846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 389 - 595
Target Start/End: Complemental strand, 48005293 - 48005087
Alignment:
| Q |
389 |
gttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaa |
488 |
Q |
| |
|
|||||| ||||| ||||||| ||| || |||||||||||||| | |||||||||||||||||||||||||| | |||||||||| || ||| |||| |
|
|
| T |
48005293 |
gttgatctgagttagctgagtattaagctcacgcacgttggcactacggtgagcctcaatgaattgcatggtaccattgttttgggatgagactcgagag |
48005194 |
T |
|
| Q |
489 |
agatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaaggg |
588 |
Q |
| |
|
||||| || |||||||| ||||||| ||| || || ||||| ||||||||||| | | ||||||| | |||||||||||| |||||||||| || |||| |
|
|
| T |
48005193 |
agataacgatctatgactgtatcaacattggggtggccaaatgaaaataccttctccccaggtgagtaaacaacgagagcaacatctgcaccgcagaggg |
48005094 |
T |
|
| Q |
589 |
tgcaaag |
595 |
Q |
| |
|
||||||| |
|
|
| T |
48005093 |
tgcaaag |
48005087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 381 - 594
Target Start/End: Complemental strand, 49045462 - 49045250
Alignment:
| Q |
381 |
agtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtggga |
480 |
Q |
| |
|
|||||| ||||||||||| ||| || | |||| || |||| ||| |||||| | ||||||||||| ||||||| ||||| |||||||| ||||||| |
|
|
| T |
49045462 |
agtgtgttgttgatttgaatcaactcaacattaagctcacacactttggcgctacggtgagcctcgatgaattatgtggtgctattgttttgcggtggga |
49045363 |
T |
|
| Q |
481 |
cgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcacc |
580 |
Q |
| |
|
| | | |||||| | |||| ||| ||||||| ||| |||||||| || |||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
49045362 |
ccccaaagagatagtgatcta-gactgtatcaacatttggatgaccgaaagaaaataccttttcactaggtgagaatacaacgagagcaacatctacacc |
49045264 |
T |
|
| Q |
581 |
acaaagggtgcaaa |
594 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
49045263 |
acaaagggtgcaaa |
49045250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 434 - 595
Target Start/End: Complemental strand, 33477569 - 33477408
Alignment:
| Q |
434 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
533 |
Q |
| |
|
||||||||||||||||||||| | | | ||||||||||||||||| |||| ||||| |||||||||||||||| || || ||||| ||||| ||| |
|
|
| T |
33477569 |
gcggtgagcctcaatgaattgtaagatcctattgttttggggtgggacttgagatagataacggtctatgaccgtataaacatctggatggccaaatgaa |
33477470 |
T |
|
| Q |
534 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
33477469 |
aacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaag |
33477408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 234 - 595
Target Start/End: Complemental strand, 2540887 - 2540526
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||| | ||||||||| |||||||||| | |||| | | || |||||||||||| | || || | |
|
|
| T |
2540887 |
acaagtttcttaatctcctccaaagcctttttgaaaacttcaagttgggccctattcatcccatcaacggaaccagcccaccaaaattgagtctcattcg |
2540788 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgct-gttgatttgagtcagctgagcattgagttcacgcacgttggcgt |
432 |
Q |
| |
|
||||| |||| | ||| ||||| ||| || |||||||| |||||| ||| |||||| |||||||| ||| ||| || || ||||||||||| |
|
|
| T |
2540787 |
ccttgcgcaagtggctcagctcttcatcacgtttcttctcattgtccagt-agctggttgatctgagtcagttgaatattcagctcgcgcacgttggcac |
2540689 |
T |
|
| Q |
433 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
532 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||| | ||||||| |||| ||||| | |||||||||||||||| ||| || || ||||| || |
|
|
| T |
2540688 |
tacggtgagcctcaatgaattgcatggtaccattgtttttgagtgggactcgagagagataatgatctatgaccgtatcaacattgggttggccaaatga |
2540589 |
T |
|
| Q |
533 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
||||||||| | | ||||||||| | || ||||||| ||||||||||||| || |||||||| |
|
|
| T |
2540588 |
aaataccttctccccaggtgagaaaataatgagagcaacatctgcaccacagagagtgcaaag |
2540526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 47840406 - 47840535
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||| |||||||||| ||| ||||| |||| |||||||||||| ||||| ||||||||| | || ||| |
|
|
| T |
47840406 |
ttgcaacatagggttctgaaaaaactgtgttggatacatttgagcctgtggaggatttggttgatgatggagagggatgttagaggatgaaccatttcca |
47840505 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagca |
224 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
47840506 |
acaaaaaatggaagagtttgagtaggagca |
47840535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 390 - 595
Target Start/End: Complemental strand, 33467559 - 33467356
Alignment:
| Q |
390 |
ttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaa |
489 |
Q |
| |
|
||||||||||||||| |||||| || || |||| ||||| | || | |||||||||||||||||| | | | ||||||| ||||| || ||| | |
|
|
| T |
33467559 |
ttgatttgagtcagcatagcattaagctcgcgcaatttggcactacgattagcctcaatgaattgcatagggccactgttttgaggtggtacttgag--a |
33467462 |
T |
|
| Q |
490 |
gatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggt |
589 |
Q |
| |
|
|||| || |||||||||||||||| ||| || |||||||| ||||| ||||| |||||||||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
33467461 |
gataacgatctatgaccgtatcaacatttgggtgaccaaatgaaaacaccttctcactaggtgagaatacaatgagagcaatatatgcaccacaaagggt |
33467362 |
T |
|
| Q |
590 |
gcaaag |
595 |
Q |
| |
|
|||||| |
|
|
| T |
33467361 |
gcaaag |
33467356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 433 - 595
Target Start/End: Complemental strand, 34506708 - 34506546
Alignment:
| Q |
433 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
532 |
Q |
| |
|
|||||||||| |||||||||||| | | | ||||||||||||||||| |||| |||||||| ||||||| ||| |||| || || || ||||| || |
|
|
| T |
34506708 |
tgcggtgagcgtcaatgaattgccagatcccattgttttggggtgggacctgagatagatagcgatctatgatcgtctcaacatctgggtgcccaaatga |
34506609 |
T |
|
| Q |
533 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
34506608 |
aaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaag |
34506546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 438 - 583
Target Start/End: Original strand, 47825973 - 47826118
Alignment:
| Q |
438 |
tgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaata |
537 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||| ||||||||| |||| ||||| || ||||||| |||||||| ||| || || ||||| ||||||| |
|
|
| T |
47825973 |
tgagccttaatgaattgcatggtaccattgtttttgggtgggacttgagagagataacgatctatgagcgtatcaacattgggttggccaaatgaaaata |
47826072 |
T |
|
| Q |
538 |
cctttccactaggtgagaatacaacgagagcagcatctgcaccaca |
583 |
Q |
| |
|
|||| | | ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
47826073 |
ccttctctccaggtgagaaaacaacgagagcaacatctgcaccaca |
47826118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 2541050 - 2540908
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| |||| ||||||| |||| ||||| ||||||||| | || ||| |
|
|
| T |
2541050 |
ttgcaacatagggttctgaaaaagttgtgctggaaacatttgagtttgccgaggatttggttgatgatcgagaggcatgttagaggatgaaccatttcca |
2540951 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||| ||||||| |
|
|
| T |
2540950 |
acaaaaaatggaaaggtttgagtaggagcagcctggattacaa |
2540908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 47825606 - 47825748
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||||||| ||| ||||| ||| ||||||| |||| ||||| |||||||| | || ||| |
|
|
| T |
47825606 |
ttgcaacatggggttttgaaaaaactgtgttggaaacatttgagtttgcggaggatttgattgatgatcgagaggcatgttaaaggatgaaccatttcca |
47825705 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||| ||||||| |
|
|
| T |
47825706 |
acaaaaaatggaaagatttgagtaggagcactctggattacaa |
47825748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 47830322 - 47830451
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
|||||||||||| || |||||| |||| |||||||||||||| ||| ||||| |||| |||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
47830322 |
ttgcaacataggattctgaaaatactgtgttggaaacatttgagtttgcggaggatttggttgatgatggagaggcatgttagaggatgaactattgcca |
47830421 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagca |
224 |
Q |
| |
|
|||||||| ||| |||||||||| |||| |
|
|
| T |
47830422 |
ccaaaaaattgaatggtttgagtaggagca |
47830451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 48005448 - 48005363
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa |
319 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||||||||||||| |||| ||||| | |||| | |||| | |||||||||| |
|
|
| T |
48005448 |
acaagtttcttaagctcctccaaatcattcttgaataattcaagttggaccctgttcatcccatcaacgggaccatcccaccaaaa |
48005363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 49045605 - 49045512
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcct |
327 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||| | || | |||||||||||||||||| | ||||| |
|
|
| T |
49045605 |
acaagtttcttaagctccaacaaaatcttcttgaataattcaagttgtgccctattcatcccattaatcggacaagcccaccaaaattgagcct |
49045512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 47825780 - 47825854
Alignment:
| Q |
245 |
aagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa |
319 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||| |||||| |||| | || | | |||| |||||||||||| |
|
|
| T |
47825780 |
aagcgcctccaaagcctttttgaaaaattcaagttggtccctactcatcccattaacaggaccagcccaccaaaa |
47825854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 49045764 - 49045659
Alignment:
| Q |
99 |
aacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaa |
198 |
Q |
| |
|
|||||| |||| |||||||||||||| | ||| || | || |||||||||| ||||||||| ||||||| ||||| |||||| || | || |||||| |
|
|
| T |
49045764 |
aacatatggttatgaaaaatttgtggcgaaaatatctcagtttgttgaggatttggctgataatggagagggatgttagaggataaatcatttccaacag |
49045665 |
T |
|
| Q |
199 |
aaaatg |
204 |
Q |
| |
|
|||||| |
|
|
| T |
49045664 |
aaaatg |
49045659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 27 - 595
Target Start/End: Original strand, 9757246 - 9757814
Alignment:
| Q |
27 |
tattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaatttgtggtg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
9757246 |
tattattacaccatattattgaagccatggtgaggcatcattgatccatcaaacaaatgaggctgcaattgcaacataggattttgaaaaaaatgtgatg |
9757345 |
T |
|
| Q |
127 |
gaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagtagtagcatg |
226 |
Q |
| |
|
||||||||| || |||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9757346 |
gaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttgtagcatg |
9757445 |
T |
|
| Q |
227 |
ctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcc |
326 |
Q |
| |
|
||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||| || ||| |
|
|
| T |
9757446 |
ttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaaatttgcc |
9757545 |
T |
|
| Q |
327 |
tgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgt |
426 |
Q |
| |
|
| ||||||||| |||||| ||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
9757546 |
tccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagtcatccgagcattgagttcacgaacgt |
9757645 |
T |
|
| Q |
427 |
tggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgacc |
526 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
9757646 |
tggcattgcggtgagcctcaatgagttgcatcgtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgacc |
9757745 |
T |
|
| Q |
527 |
aaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9757746 |
aaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaag |
9757814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 389 - 595
Target Start/End: Complemental strand, 20959987 - 20959781
Alignment:
| Q |
389 |
gttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaa |
488 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||| | |||||||||||||| ||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
20959987 |
gttgatttgagtcagctgagtattgagctcgcgcacgttggcgcttcggtgagcctcaataaattgcatggtaccattgttttggggtgggacccgagag |
20959888 |
T |
|
| Q |
489 |
agatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaaggg |
588 |
Q |
| |
|
||||| || |||||||||||||||| ||| || || ||||||||||||||||| | | ||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
20959887 |
agataacgatctatgaccgtatcaacattggggtggccaaaggaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagaggg |
20959788 |
T |
|
| Q |
589 |
tgcaaag |
595 |
Q |
| |
|
||||||| |
|
|
| T |
20959787 |
tgcaaag |
20959781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 389 - 595
Target Start/End: Complemental strand, 20973890 - 20973684
Alignment:
| Q |
389 |
gttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaa |
488 |
Q |
| |
|
|||| ||||||||||||||| |||||| || |||||||||||| | |||||||||||||||||||||||||| | | ||||||||||||||| |||| |
|
|
| T |
20973890 |
gttggtttgagtcagctgagtattgagctcgcgcacgttggcgctacggtgagcctcaatgaattgcatggtaccatagttttggggtgggacccgagag |
20973791 |
T |
|
| Q |
489 |
agatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaaggg |
588 |
Q |
| |
|
||||| || |||||||||| ||||||||| || || ||||| ||||||||||| | | ||||||||| |||| ||||||| |||||||||| || |||| |
|
|
| T |
20973790 |
agataacgatctatgaccgcatcaagattggggtggccaaatgaaaataccttctctccaggtgagaaaacaatgagagcaacatctgcaccgcataggg |
20973691 |
T |
|
| Q |
589 |
tgcaaag |
595 |
Q |
| |
|
||||||| |
|
|
| T |
20973690 |
tgcaaag |
20973684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 234 - 594
Target Start/End: Original strand, 9761229 - 9761589
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| ||||||||||||| || | ||||||||||||||||||| || |||||||||| | || | |||||||||||||||||| | ||| | | |
|
|
| T |
9761229 |
acaagtttcttaagctccatcacaatcttcttgaataattcaagtcgagccctattcatcccattaatcggacaagcccaccaaaattaagcattgaacg |
9761328 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgtt |
433 |
Q |
| |
|
||||| |||| || | ||||||||||| ||| |||| | | ||||||| ||||||||||| ||| || ||||||||| ||| ||| |||||| | |
|
|
| T |
9761329 |
ccttgcacaaaagactcaactcatcaccaagctttttcttctcgttcagtgtgttgttgatttgaatcaactcagcattgagcgcacacactttggcgct |
9761428 |
T |
|
| Q |
434 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
533 |
Q |
| |
|
|| |||| ||||||||| | |||||| |||||||| |||||||| || | |||||||| ||||||| ||||||| ||| |||||||| || ||| |
|
|
| T |
9761429 |
acgatgaggctcaatgaactctatggtgctattgttttgcggtgggacccgaaagagatagcgatctatgattgtatcaacatttggatgaccgaaagaa |
9761528 |
T |
|
| Q |
534 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaa |
594 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
9761529 |
aataccttttgactaggtgagaatacaactagagcaacatctacaccacaaagggtgcaaa |
9761589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 541
Target Start/End: Complemental strand, 30538996 - 30538852
Alignment:
| Q |
397 |
gagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcg |
496 |
Q |
| |
|
||||| || |||||||||||| ||||| |||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||| ||||| || |
|
|
| T |
30538996 |
gagtctgcagagcattgagtttgcgcactttggcgttacggtacgcctcaatgaattgcattatgccattgttttggggtgggatctgagagagataacg |
30538897 |
T |
|
| Q |
497 |
gtctatgaccgtatcaagattaggatgaccaaaggaaaatacctt |
541 |
Q |
| |
|
| |||||| || |||| ||| || |||||||| ||||||||||| |
|
|
| T |
30538896 |
atttatgactgtttcaacatttgggtgaccaaatgaaaatacctt |
30538852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 9761066 - 9761187
Alignment:
| Q |
94 |
attgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcc |
193 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | || ||| | || ||||||||| |||||||||| ||||||| |||||| |||||| || | || || |
|
|
| T |
9761066 |
attgcaacatagggttataaaaaatttgtggcgaaagcatcttagtttgttgagg-attggctgataatggagaggaatgttagaggataaatcattacc |
9761164 |
T |
|
| Q |
194 |
aacaaaaaatggaagagtttgag |
216 |
Q |
| |
|
|||| ||||||||| |||||||| |
|
|
| T |
9761165 |
aacagaaaatggaaaagtttgag |
9761187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 595
Target Start/End: Original strand, 30496447 - 30496520
Alignment:
| Q |
522 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| || |||| | ||| ||||||||||||||||||||| |
|
|
| T |
30496447 |
tgaccaaatgaaaataccttctcactaggtgagaatataattagagtaacatatgcaccacaaagggtgcaaag |
30496520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 20960303 - 20960181
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||| ||| ||||||||| ||||| |||| |||||||||| ||||| ||||||||| ||| ||| |
|
|
| T |
20960303 |
ttgcaacatagggttttgataaaactctgctggaagcatctgagcttgtggaggatttggtgtatgatggagaggcatgttagaggatgaactgtttcca |
20960204 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagt |
217 |
Q |
| |
|
|||||||| |||| |||||||| |
|
|
| T |
20960203 |
acaaaaaacggaaaggtttgagt |
20960181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 20974208 - 20974086
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| ||| ||| |||| ||||| ||| ||||||||| ||||| || | |||||||||||| ||||| |||||||| | | ||| |
|
|
| T |
20974208 |
ttgcaacatagggttctgataaaactgtgctggaagcatctgagcttgtggaggatttagttgatgatggagaggcatgttaaaggatgaattgcttcca |
20974109 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagt |
217 |
Q |
| |
|
|||||||| |||| |||||||| |
|
|
| T |
20974108 |
acaaaaaacggaaaggtttgagt |
20974086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 331 - 594
Target Start/End: Complemental strand, 39233 - 38970
Alignment:
| Q |
331 |
tttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggc |
430 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||||||||||| || || | ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
39233 |
tttccttgcgcaaattgctcagctcatcaccaattttcttctcggcatgcatcatgttattgatttgagtcaactgagcattgagttcgcgcacgttggc |
39134 |
T |
|
| Q |
431 |
gttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaag |
530 |
Q |
| |
|
||||||| |||||||||||||||||| ||| | |||||||||||||||||||| |||||||| | || |||||||||||||||||| || ||||||||| |
|
|
| T |
39133 |
attgcggttagcctcaatgaattgcatagtgccattgttttggggtgggacgagggaaagataacagtatatgaccgtatcaagattggggtgaccaaag |
39034 |
T |
|
| Q |
531 |
gaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaa |
594 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39033 |
gaaaatagctttccactaggtgagaatacaacaagagcagcatctgcaccacaaagggtgcaaa |
38970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 234 - 595
Target Start/End: Complemental strand, 35101 - 34740
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||||||||||||||| |||||||||| | | || ||||||||||||||||| | ||||| | |
|
|
| T |
35101 |
acaagtttcttaagctccactaaaatcttcttgaataattcaagttgagccctattcatcccaccaattggacaagcccaccaaaattgagccttgaacg |
35002 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgtt |
433 |
Q |
| |
|
||||| |||| ||| | ||||||| || |||| ||||| | ||||||||| | ||||||||| ||| || |||||| || |||| ||| ||||| | |
|
|
| T |
35001 |
ccttgcacaaaaggctcaactcatcatcactctttttctcctcgtccagtgtgttattgatttgaatcaactcagcattaagctcacacactttggcact |
34902 |
T |
|
| Q |
434 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
533 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| |||||||| || ||| |
|
|
| T |
34901 |
atggtgagcctcaatgaattccatggtgctgttgttttgtggtgggaccccagagagatagcgatctataaccgtatcaacatttggatgaccgaaagaa |
34802 |
T |
|
| Q |
534 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34801 |
aatactttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaag |
34740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 35265 - 35143
Alignment:
| Q |
94 |
attgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcc |
193 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||| || |||||||||| ||||||||| ||||||| ||||| |||||| || | || || |
|
|
| T |
35265 |
attgcaatatagggtaatgaaaaaattgtggtggaaacatttcagtttgttgaggatttggctgataatggagagggatgttagaggataaatcattacc |
35166 |
T |
|
| Q |
194 |
aacaaaaaatggaagagtttgag |
216 |
Q |
| |
|
| ||||||||| || |||||||| |
|
|
| T |
35165 |
agcaaaaaatgaaaaagtttgag |
35143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 239 - 595
Target Start/End: Original strand, 16776357 - 16776713
Alignment:
| Q |
239 |
tttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttg |
338 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||| || ||||||| | |||| | |||| |||||||||||| | ||||| ||| ||||| |
|
|
| T |
16776357 |
tttcttagtctcctccaaagcctttttgaaaaattcaagttgggccatattcatcccatcaacgggaccagcccaccaaaattgagcctcggtcgccttg |
16776456 |
T |
|
| Q |
339 |
tgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctg-ttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcgg |
437 |
Q |
| |
|
|||| | || ||||| ||| || |||||||| |||||| |||| ||||| ||||||||||| | |||||| |||| |||||||||||||||| |
|
|
| T |
16776457 |
cgcaagtgactcagctcttcagcacgtttcttctccatgtccagta-gctggttgatctgagtcagctgggtattgagctcacacacgttggcgttgcgg |
16776555 |
T |
|
| Q |
438 |
tgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaata |
537 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| ||||||| |
|
|
| T |
16776556 |
tgagcctcaatgaattgcatggtaccattgttttggggtgggactcgagagagataacgatctatgaccgtatcaatattgggttggccaaatgaaaata |
16776655 |
T |
|
| Q |
538 |
cctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||| | | ||||||||| ||||| |||||| ||||||||||||| || |||||||| |
|
|
| T |
16776656 |
ccttctccccaggtgagaaaacaacaagagcaacatctgcaccacagagagtgcaaag |
16776713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 16776188 - 16776331
Alignment:
| Q |
94 |
attgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcc |
193 |
Q |
| |
|
|||| |||||||| || ||||||| ||||| |||||||||||| | ||| |||| |||| |||||||||||| ||||| ||||||||| | || || |
|
|
| T |
16776188 |
attgtaacataggattctgaaaaaattgtgctggaaacatttgggtttgcgaaggatttggttgatgatggagaggcatgttagaggatgaaccatttcc |
16776287 |
T |
|
| Q |
194 |
aacaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
16776288 |
aacaaaaaatggaaaggtttgagtaggagcaccctgaattacaa |
16776331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 381 - 595
Target Start/End: Complemental strand, 22650504 - 22650290
Alignment:
| Q |
381 |
agtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtggga |
480 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||| |||| ||| |||| | | || ||||||||||| |||| ||||||| ||||||||| | ||||| |
|
|
| T |
22650504 |
agtgtgttgttgatttgaatcaacatagcattgagctcacacactttggtgctacgatgagcctcaataaattctatggtgttgttgttttgcgatggga |
22650405 |
T |
|
| Q |
481 |
cgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcacc |
580 |
Q |
| |
|
| ||| |||||||| ||||||||| |||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22650404 |
ccccagagagatagcgatctatgaccatatcaacatttggatgaccgaaagaaaatacctttttactaggtgagaatacaacgagagcaacatctacacc |
22650305 |
T |
|
| Q |
581 |
acaaagggtgcaaag |
595 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22650304 |
acaaagggtgcaaag |
22650290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 22650814 - 22650676
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||||| | | |||||||||| ||||||||| ||||||| ||||| |||||| || | || ||| |
|
|
| T |
22650814 |
ttgcaacatagggttatgaaaattttgtggcgaaaacatctcaatttgttgaggatttggctgataatggagagggatgttagaggataaatctttacca |
22650715 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaatt |
233 |
Q |
| |
|
||| ||||||||| ||| |||| ||||||| ||||||| |
|
|
| T |
22650714 |
acagaaaatggaaaagtgtgagcagtagcaccctgaatt |
22650676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 596
Target Start/End: Complemental strand, 22652080 - 22652035
Alignment:
| Q |
551 |
tgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagt |
596 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22652080 |
tgagaatacaacgagagcaacatctgcaccacaaagggtgtaaagt |
22652035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 22650651 - 22650558
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcct |
327 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||||||||| ||| || ||||||| | |||| |||| ||||||||||||| | ||||| |
|
|
| T |
22650651 |
acaagtttcttaagctccaccaacatcttcttgaataattcaagctgagccttattcattccatcaatcggataagcccaccaaaattgagcct |
22650558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 409 - 595
Target Start/End: Complemental strand, 19988280 - 19988094
Alignment:
| Q |
409 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
508 |
Q |
| |
|
|||| ||||||||||| | || || |||| ||| || ||||||||| || |||||| |||||||| ||| || ||||| ||||| || ||||||||||| |
|
|
| T |
19988280 |
cattaagttcacgcacactagcattacggtaagcttcgatgaattgcgtgatgtcgtcgttttgggttggaaccagagagagataacgatctatgaccgt |
19988181 |
T |
|
| Q |
509 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||| ||| || |||||||| ||||| ||||| ||| ||||||||||| || |||||| ||| ||||||||| ||||||||||| |
|
|
| T |
19988180 |
ttcaacatttgggtgaccaaatgaaaagaccttctcaccaggtgagaatataattagagcaacatatgcaccacacagggtgcaaag |
19988094 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 409 - 595
Target Start/End: Original strand, 22700346 - 22700532
Alignment:
| Q |
409 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
508 |
Q |
| |
|
||||||| || ||||| ||||| | |||| | |||||| ||||||||| |||| | ||||||||||| || |||| ||| | || ||||||||||| |
|
|
| T |
22700346 |
cattgagctcgcgcacattggctctacggtaatcctcaagtaattgcatgatgtcatcattttggggtggaacttgagagagaaaacgatctatgaccgt |
22700445 |
T |
|
| Q |
509 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|||| ||| |||| |||||| ||||||||||| ||||||||||||||| || |||||| || ||||||||||||||||||||| |
|
|
| T |
22700446 |
ttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatataattagagcaatatatgcaccacaaagggtgcaaag |
22700532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 595
Target Start/End: Complemental strand, 22002063 - 22001936
Alignment:
| Q |
468 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
567 |
Q |
| |
|
||||||||| |||| |||| ||||| | ||||||||||| |||| ||| || |||||||| |||||||||||| |||| |||||||| | | |||| |
|
|
| T |
22002063 |
ttttggggtaggacctgagagagataatgatctatgaccgtttcaacatttgggtgaccaaatgaaaataccttttcacttggtgagaagattattagag |
22001964 |
T |
|
| Q |
568 |
cagcatctgcaccacaaagggtgcaaag |
595 |
Q |
| |
|
|| ||| |||||||||||| ||||||| |
|
|
| T |
22001963 |
caacatatgcaccacaaagactgcaaag |
22001936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 19988440 - 19988370
Alignment:
| Q |
249 |
tcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa |
319 |
Q |
| |
|
||||||||||||||||||||| || ||||||| || ||||||| |||||| ||||||| ||||||||| |
|
|
| T |
19988440 |
tcctccaaagccttcttgaatgatccaagttggaccatattcatcctatcaaagggacaagtccaccaaaa |
19988370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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