View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_high_21 (Length: 273)
Name: NF16264_high_21
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 10067416 - 10067672
Alignment:
| Q |
1 |
ttacaagcttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttca |
100 |
Q |
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| T |
10067416 |
ttacaagcttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttca |
10067515 |
T |
|
| Q |
101 |
ttgaacaacgtatagattcgcataagtcttggcgcgtattgtgttattatcgtatacttcaaccaatcctttgttatatatggaactgagccttgtggaa |
200 |
Q |
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| T |
10067516 |
ttgaacaacgtatagattcgcataagtcttggcgcgtattgtgttattatcgtatacttcaaccaatcctttgttatatatggaactgagccttgtggaa |
10067615 |
T |
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| Q |
201 |
ttggaatcatagctaaaatcaccatctaataacacagcattaaaatgttaaaacaac |
257 |
Q |
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| T |
10067616 |
ttggaatcatagctaaaatcaccatctaataacacagcattaaaatgttaaaacaac |
10067672 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 48464735 - 48464639
Alignment:
| Q |
9 |
ttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaa |
105 |
Q |
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| T |
48464735 |
ttacatgacttgctagcatgtagaggaaaagattgtaaacagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaa |
48464639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 41390408 - 41390346
Alignment:
| Q |
10 |
tacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagt |
72 |
Q |
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|||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
41390408 |
tacatgacttgcaagcatgtaaagaaagagattaaatgcagctccagcccatgctgtttcagt |
41390346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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