View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16264_high_26 (Length: 226)

Name: NF16264_high_26
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16264_high_26
NF16264_high_26
[»] chr6 (8 HSPs)
chr6 (1-200)||(29477347-29477546)
chr6 (6-140)||(29522794-29522928)
chr6 (75-169)||(29826721-29826815)
chr6 (90-167)||(26937766-26937843)
chr6 (90-149)||(26849467-26849526)
chr6 (111-169)||(29695871-29695929)
chr6 (131-167)||(2185560-2185596)
chr6 (75-167)||(29759817-29759909)
[»] chr5 (1 HSPs)
chr5 (90-167)||(16691604-16691681)
[»] chr1 (1 HSPs)
chr1 (89-167)||(26136625-26136703)
[»] chr8 (1 HSPs)
chr8 (111-167)||(12589406-12589462)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 29477347 - 29477546
Alignment:
Q  1 ccagtcatttcagaaagaagtatattttgaaggtgcgctaaactttgtgtatttgaactttctctaatatcggaaagaaaacacgaggcttcaaattgat 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  29477347 ccagtcatttctgaaagaagtatattttgaaggtgcgctaaactttgtgtatttgaactttttctaatattggaaagaaaacacgaggtttcaaattgat 29477446  T
Q  101 ctgcaatcatattataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatccccaactcaaggactttatgagattccaactccaa 200  Q
    | | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||    
T  29477447 ccgaaatcgtattataaactgctcgagcaagtgttgttttccctattccgccaatcccatagatccccaccgtaaggacttcatgagattccaactccaa 29477546  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 29522928 - 29522794
Alignment:
Q  6 catttcagaaagaagtatattttgaaggtgcgctaaactttgtgtatttgaactttctctaatatcggaaagaaaacacgaggcttcaaattgatctgca 105  Q
    ||||| ||||||||| |||||||| |||||| |||| |  ||| |||||||| |||| || | |||   |||||||||||| ||||||||||| ||||||    
T  29522928 cattttagaaagaagcatattttggaggtgcactaatccatgtttatttgaattttcactgacatcatcaagaaaacacgaagcttcaaattggtctgca 29522829  T
Q  106 atcatattataaactgctcgagcatgtgttgtttt 140  Q
    |||||||||||||| ||||||||| || |||||||    
T  29522828 atcatattataaaccgctcgagcaagttttgtttt 29522794  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 29826815 - 29826721
Alignment:
Q  75 aagaaaacacgaggcttcaaattgatctgcaatcatattataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatcccca 169  Q
    |||||||||| ||  |||||||| |||  ||||||||||||||| |||||||||| |||||||||| || | ||||||||| ||||| |||||||    
T  29826815 aagaaaacacaagcattcaaatttatcaccaatcatattataaattgctcgagcaagtgttgttttacccaatccgccaattccataaatcccca 29826721  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 26937843 - 26937766
Alignment:
Q  90 ttcaaattgatctgcaatcatattataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatccc 167  Q
    ||||||||||||  |||||| |||||||| |||||| ||| |||||| ||| || |||||||||||||||||||||||    
T  26937843 ttcaaattgatcaccaatcaaattataaattgctcgtgcaagtgttgatttaccaattccgccaatcccatagatccc 26937766  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 26849526 - 26849467
Alignment:
Q  90 ttcaaattgatctgcaatcatattataaactgctcgagcatgtgttgttttccctattcc 149  Q
    |||||||||||| ||||||  ||||||||||||| ||||| |||||||||| || |||||    
T  26849526 ttcaaattgatcagcaatcgaattataaactgcttgagcaagtgttgtttttcccattcc 26849467  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 29695871 - 29695929
Alignment:
Q  111 attataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatcccca 169  Q
    |||||||||| || ||||| | || |||||||||||||| |||||||||| ||||||||    
T  29695871 attataaacttctagagcaagagtagttttccctattccaccaatcccatggatcccca 29695929  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 2185596 - 2185560
Alignment:
Q  131 gtgttgttttccctattccgccaatcccatagatccc 167  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  2185596 gtgttgttttgcctattccgccaatcccatggatccc 2185560  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 29759817 - 29759909
Alignment:
Q  75 aagaaaacacgaggcttcaaattgatctgcaatcatattataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatccc 167  Q
    ||||||||| || || ||||||| ||  ||||||| ||||||||| | | ||||| | ||||||||||| ||||| || ||||||| ||||||    
T  29759817 aagaaaacatgaagcatcaaattcatgggcaatcaaattataaacagatagagcaagagttgttttcccaattccacccatcccatggatccc 29759909  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 16691681 - 16691604
Alignment:
Q  90 ttcaaattgatctgcaatcatattataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatccc 167  Q
    |||||||||||| ||||||| |||||||| |||||||||| |||||||||| || ||||| ||||| |||| ||||||    
T  16691681 ttcaaattgatcagcaatcaaattataaattgctcgagcaagtgttgttttaccgattcctccaattccatggatccc 16691604  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 26136703 - 26136625
Alignment:
Q  89 cttcaaattgatctgcaatcatattataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatccc 167  Q
    ||||||||||||| ||||||| ||||||||||||||||| | |||||||||| |||| ||| ||| | ||||| |||||    
T  26136703 cttcaaattgatccgcaatcaaattataaactgctcgagtaagtgttgttttacctaatcctccacttccatatatccc 26136625  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 12589462 - 12589406
Alignment:
Q  111 attataaactgctcgagcatgtgttgttttccctattccgccaatcccatagatccc 167  Q
    |||||||||| || ||||| | || |||||||||||||| |||||||||| ||||||    
T  12589462 attataaacttctagagcaagagtagttttccctattccaccaatcccatggatccc 12589406  T

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