View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_high_5 (Length: 441)
Name: NF16264_high_5
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 512436 - 512732
Alignment:
| Q |
15 |
agtaccaactaacaaacgggaatttgaatccttccatacactatagccccgtttttggtaggtggtagttattcctttaactagaccaatttagttgcac |
114 |
Q |
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| T |
512436 |
agtaccaactaacaaacgggaatttgaatccttccatacactataaccccgtttttggtaggtggtagttattcctttaactagaccaatttagttgcac |
512535 |
T |
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| Q |
115 |
cctatttttcaactagcaaaatataataatttacatggctaagcacacatgctagcaattgaattgagtggtacattcctttcaaaaggaacaaaagaag |
214 |
Q |
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| T |
512536 |
cctatttttcaactagcaaaatataataatttacatgcctaagcacacatgctagcaattgaattgagtggtacattcctttcaaaaagaacaaaagaag |
512635 |
T |
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| Q |
215 |
caattgaataccctttttctaccaactactaatacgagagtttggcacctacatcccacagcagcacacatatttattgtacactcaattacttagg |
311 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
512636 |
caattcaataccctttttctaccaactactaatacgagagtttggcacctacatcccacagcagcacacatatttattgtacactcaattacttagg |
512732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 512762 - 512833
Alignment:
| Q |
364 |
tctcttgaatgtacacaatacttccctccaataaattcttgctttgattgaatacaaacttttttcttctct |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
512762 |
tctcttgaatgtacacaatacttccctccaataaattcttgctttgattgaatacaaacttttttcttctct |
512833 |
T |
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