View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16264_low_1 (Length: 723)
Name: NF16264_low_1
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_1 |
 | |
|
| [»] scaffold0121 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 629; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 706
Target Start/End: Complemental strand, 39706355 - 39705667
Alignment:
| Q |
18 |
tactgaacatattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39706355 |
tactgaacatattattacaccatattattgaagccatggtgaggcatcatcaatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaa |
39706256 |
T |
|
| Q |
118 |
tttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39706255 |
tttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgaat |
39706156 |
T |
|
| Q |
218 |
agtagcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaa |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39706155 |
agtagcatgctgaattacaagtttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcataccatcagccggacaagcccaccaa |
39706056 |
T |
|
| Q |
318 |
aacttagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39706055 |
aacttagcctgggtttccttgtgcaaattgctcagctcatcaccaatcttcttctcagcctccagtgtgctgttgatttgagtcagctgagcattgagtt |
39705956 |
T |
|
| Q |
418 |
cacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagatt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39705955 |
cacgcacgttggcgttgcggtgagcctcaatgaattgcacggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagatt |
39705856 |
T |
|
| Q |
518 |
aggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
39705855 |
aggatgaccaaaggaaaatacctttccactagttgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagc |
39705756 |
T |
|
| Q |
618 |
ccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39705755 |
ccgctacgacgctttgagaaagtcacttgcaggtggctctcgttgctcatctttttcatttcgatcttttggcgacctcggcctttctt |
39705667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 234 - 704
Target Start/End: Complemental strand, 11620330 - 11619860
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||||||||||||| |||||||||| | |||| | |||| |||||||||||| | || || || |
|
|
| T |
11620330 |
acaagtttcttaagctcatccagagccttcttgaataattcaagttgggccctattcatcccatcaacgggaccagcccaccaaaattgagtctcagtcg |
11620231 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctg-ttgatttgagtcagctgagcattgagttcacgcacgttggcgt |
432 |
Q |
| |
|
|||||||||| ||||| ||||| ||| || ||||||||| |||||| |||| ||||| ||||||| |||| |||||| || | |||| |||| |
|
|
| T |
11620230 |
ccttgtgcaagttgctcagctcttcagcacgtttcttctcgatgtccagta-gctggttgatctgagtcacctgaatattgagctcgcacacgctggcac |
11620132 |
T |
|
| Q |
433 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
532 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| || |
|
|
| T |
11620131 |
tacggtgagcctcaatgaattgcatggtaccattgttttggggtgggacccgagagagataacgatctatgaccgtatcaacattggggtggccaaatga |
11620032 |
T |
|
| Q |
533 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgcttt |
632 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||| |||||||||| || |||||||||||||| || ||||| |||||||| || ||||| ||||| |
|
|
| T |
11620031 |
aaataccttctctctaggtgagaaaacaacaagagcaacatctgcaccacagagggtgcaaagctcactggcttttttgaagagcccactacggcgcttc |
11619932 |
T |
|
| Q |
633 |
gagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || |||||||| || ||||||||||||||| ||| |||| |
|
|
| T |
11619931 |
gagaaagtcacttgcaagttgctctcgttggtaatttttttcatttcaatcttttggcgaccttggcttttc |
11619860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 468 - 697
Target Start/End: Complemental strand, 33238474 - 33238245
Alignment:
| Q |
468 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
567 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||||||||||| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
33238474 |
ttttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagag |
33238375 |
T |
|
| Q |
568 |
cagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcat |
667 |
Q |
| |
|
|| || |||||| |||||||| |||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || |||||||| |
|
|
| T |
33238374 |
caatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcat |
33238275 |
T |
|
| Q |
668 |
ctttttcatctcgatcttttggcgacctcg |
697 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |
|
|
| T |
33238274 |
ctttttcatctcaatcttttgtcgacctcg |
33238245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 468 - 697
Target Start/End: Complemental strand, 33246395 - 33246166
Alignment:
| Q |
468 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
567 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||||||||||| |||| ||| |||| |||||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
33246395 |
ttttggggtgggatcagagacaaataacgatctatgaccgtttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatatgattagag |
33246296 |
T |
|
| Q |
568 |
cagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcat |
667 |
Q |
| |
|
|| || |||||| |||||||| |||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||| || |||||||| |
|
|
| T |
33246295 |
caatatatgcaccacaaagggtacaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctttcattgctcat |
33246196 |
T |
|
| Q |
668 |
ctttttcatctcgatcttttggcgacctcg |
697 |
Q |
| |
|
|||||||||||| || ||||| |||||||| |
|
|
| T |
33246195 |
ctttttcatctcaattttttgacgacctcg |
33246166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 11620493 - 11620351
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||| ||||| ||| ||| |||| ||||||||| ||||||||| ||||| |||| |||||||||||| ||||| ||||| ||| ||| ||| |
|
|
| T |
11620493 |
ttgcaacattgggttctgataaaactgtgctggaaacatatgagcttgtggaggatttggttgatgatggagaggcatgttggaggacgaactgtttcca |
11620394 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
||||| | ||||| |||||||||| |||| ||| ||||||| |
|
|
| T |
11620393 |
gcaaaatacggaagggtttgagtaggagcaccctggattacaa |
11620351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 27 - 716
Target Start/End: Original strand, 9757246 - 9757935
Alignment:
| Q |
27 |
tattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaatttgtggtg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
9757246 |
tattattacaccatattattgaagccatggtgaggcatcattgatccatcaaacaaatgaggctgcaattgcaacataggattttgaaaaaaatgtgatg |
9757345 |
T |
|
| Q |
127 |
gaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagtagtagcatg |
226 |
Q |
| |
|
||||||||| || |||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9757346 |
gaaacatttcagattgttgagtatttggctgatgatggagataaatgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttgtagcatg |
9757445 |
T |
|
| Q |
227 |
ctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcc |
326 |
Q |
| |
|
||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||| || ||| |
|
|
| T |
9757446 |
ttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatccttattcattccatcaaccggacaagcccaccaaaaatttgcc |
9757545 |
T |
|
| Q |
327 |
tgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgt |
426 |
Q |
| |
|
| ||||||||| |||||| ||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
9757546 |
tccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatccagtgtgttgttgatttgagtcatccgagcattgagttcacgaacgt |
9757645 |
T |
|
| Q |
427 |
tggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgacc |
526 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
9757646 |
tggcattgcggtgagcctcaatgagttgcatcgtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattggggtgacc |
9757745 |
T |
|
| Q |
527 |
aaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacga |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9757746 |
aaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacga |
9757845 |
T |
|
| Q |
627 |
cgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9757846 |
cgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctttccactcgac |
9757935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 389 - 704
Target Start/End: Complemental strand, 20959987 - 20959672
Alignment:
| Q |
389 |
gttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaa |
488 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||| | |||||||||||||| ||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
20959987 |
gttgatttgagtcagctgagtattgagctcgcgcacgttggcgcttcggtgagcctcaataaattgcatggtaccattgttttggggtgggacccgagag |
20959888 |
T |
|
| Q |
489 |
agatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaaggg |
588 |
Q |
| |
|
||||| || |||||||||||||||| ||| || || ||||||||||||||||| | | ||||||||| |||||||||||| |||||||||| || |||| |
|
|
| T |
20959887 |
agataacgatctatgaccgtatcaacattggggtggccaaaggaaaataccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagaggg |
20959788 |
T |
|
| Q |
589 |
tgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg |
688 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
20959787 |
tgcaaagctcactggctttcttgaagagaccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttg |
20959688 |
T |
|
| Q |
689 |
gcgacctcggcctttc |
704 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
20959687 |
gcgacctcggcttttc |
20959672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 389 - 697
Target Start/End: Complemental strand, 20973890 - 20973582
Alignment:
| Q |
389 |
gttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaa |
488 |
Q |
| |
|
|||| ||||||||||||||| |||||| || |||||||||||| | |||||||||||||||||||||||||| | | ||||||||||||||| |||| |
|
|
| T |
20973890 |
gttggtttgagtcagctgagtattgagctcgcgcacgttggcgctacggtgagcctcaatgaattgcatggtaccatagttttggggtgggacccgagag |
20973791 |
T |
|
| Q |
489 |
agatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaaggg |
588 |
Q |
| |
|
||||| || |||||||||| ||||||||| || || ||||| ||||||||||| | | ||||||||| |||| ||||||| ||||||||||||| |||| |
|
|
| T |
20973790 |
agataacgatctatgaccgcatcaagattggggtggccaaatgaaaataccttctctccaggtgagaaaacaatgagagcaacatctgcaccgcataggg |
20973691 |
T |
|
| Q |
589 |
tgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg |
688 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| ||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
20973690 |
tgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttgcaagttgctctcgttgctaatttttttgatctcaatcttttg |
20973591 |
T |
|
| Q |
689 |
gcgacctcg |
697 |
Q |
| |
|
||||||||| |
|
|
| T |
20973590 |
gcgacctcg |
20973582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 234 - 694
Target Start/End: Original strand, 9761229 - 9761689
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| ||||||||||||| || | ||||||||||||||||||| || |||||||||| | || | |||||||||||||||||| | ||| | | |
|
|
| T |
9761229 |
acaagtttcttaagctccatcacaatcttcttgaataattcaagtcgagccctattcatcccattaatcggacaagcccaccaaaattaagcattgaacg |
9761328 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgtt |
433 |
Q |
| |
|
||||| |||| || | ||||||||||| ||| |||| | | ||||||| ||||||||||| ||| || ||||||||| ||| ||| |||||| | |
|
|
| T |
9761329 |
ccttgcacaaaagactcaactcatcaccaagctttttcttctcgttcagtgtgttgttgatttgaatcaactcagcattgagcgcacacactttggcgct |
9761428 |
T |
|
| Q |
434 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
533 |
Q |
| |
|
|| |||| ||||||||| | |||||| |||||||| |||||||| || | |||||||| ||||||| ||||||| ||| |||||||| || ||| |
|
|
| T |
9761429 |
acgatgaggctcaatgaactctatggtgctattgttttgcggtgggacccgaaagagatagcgatctatgattgtatcaacatttggatgaccgaaagaa |
9761528 |
T |
|
| Q |
534 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttg |
633 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||| |||| ||||||||||||| ||| || ||||||||||||| |||||||||| ||||| |
|
|
| T |
9761529 |
aataccttttgactaggtgagaatacaactagagcaacatctacaccacaaagggtgcaaaactcactgactttcttgaagagcccgctacgacactttg |
9761628 |
T |
|
| Q |
634 |
agaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacc |
694 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
9761629 |
agaaagtcacttggaggtttctctcgttattcatttttttcatctcaatcttttggcgacc |
9761689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 522 - 697
Target Start/End: Original strand, 30496447 - 30496622
Alignment:
| Q |
522 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgc |
621 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| || |||| | ||| |||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30496447 |
tgaccaaatgaaaataccttctcactaggtgagaatataattagagtaacatatgcaccacaaagggtgcaaagctcgctagctttcttgaagagtccac |
30496546 |
T |
|
| Q |
622 |
tacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcg |
697 |
Q |
| |
|
|| | ||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30496547 |
tatggcgcttcgagaaagtcacttgcaggttgctttcattgctcatctttttcatcataatcttttggcgacctcg |
30496622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 500 - 655
Target Start/End: Complemental strand, 30496041 - 30495886
Alignment:
| Q |
500 |
tatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcg |
599 |
Q |
| |
|
||||||||| |||| | | || |||||||| |||||||||| ||| | ||||||||| || |||||| || ||||| ||| ||||||||| || | |
|
|
| T |
30496041 |
tatgaccgtttcaacacttggctgaccaaataaaaataccttctcaccaagtgagaatataattagagcaagatatgcacgacaacgggtgcaaaacttg |
30495942 |
T |
|
| Q |
600 |
ctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgct |
655 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30495941 |
ctagctttcttgaagagcccactacgacgcttcgagaaagtcacttgcaggttgct |
30495886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 697
Target Start/End: Original strand, 30536834 - 30537007
Alignment:
| Q |
525 |
ccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctac |
624 |
Q |
| |
|
||||| ||||||||||| ||| | ||||||||| || |||||| ||| ||| || |||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
30536834 |
ccaaatgaaaataccttctcaccatgtgagaatataattagagcaacatatgcgccacaaagggtgcaaagctcgctagctatcttgaagagcccactat |
30536933 |
T |
|
| Q |
625 |
gacgctttgagaaagtcacttgcaggttgc-tctcgttgctcatctttttcatctcgatcttttggcgacctcg |
697 |
Q |
| |
|
| |||| | |||||||||||||| |||| | || |||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
30536934 |
ggagcttcaaaaaagtcacttgcagattgcttttcattgctcatatttttcatcttaatctattggcgacctcg |
30537007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 541
Target Start/End: Complemental strand, 30538996 - 30538852
Alignment:
| Q |
397 |
gagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcg |
496 |
Q |
| |
|
||||| || |||||||||||| ||||| |||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||| ||||| || |
|
|
| T |
30538996 |
gagtctgcagagcattgagtttgcgcactttggcgttacggtacgcctcaatgaattgcattatgccattgttttggggtgggatctgagagagataacg |
30538897 |
T |
|
| Q |
497 |
gtctatgaccgtatcaagattaggatgaccaaaggaaaatacctt |
541 |
Q |
| |
|
| |||||| || |||| ||| || |||||||| ||||||||||| |
|
|
| T |
30538896 |
atttatgactgtttcaacatttgggtgaccaaatgaaaatacctt |
30538852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 9761066 - 9761187
Alignment:
| Q |
94 |
attgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcc |
193 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | || ||| | || ||||||||| |||||||||| ||||||| |||||| |||||| || | || || |
|
|
| T |
9761066 |
attgcaacatagggttataaaaaatttgtggcgaaagcatcttagtttgttgagg-attggctgataatggagaggaatgttagaggataaatcattacc |
9761164 |
T |
|
| Q |
194 |
aacaaaaaatggaagagtttgag |
216 |
Q |
| |
|
|||| ||||||||| |||||||| |
|
|
| T |
9761165 |
aacagaaaatggaaaagtttgag |
9761187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 20960303 - 20960181
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||| ||| ||||||||| ||||| |||| |||||||||| ||||| ||||||||| ||| ||| |
|
|
| T |
20960303 |
ttgcaacatagggttttgataaaactctgctggaagcatctgagcttgtggaggatttggtgtatgatggagaggcatgttagaggatgaactgtttcca |
20960204 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagt |
217 |
Q |
| |
|
|||||||| |||| |||||||| |
|
|
| T |
20960203 |
acaaaaaacggaaaggtttgagt |
20960181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 20974208 - 20974086
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| ||| ||| |||| ||||| ||| ||||||||| ||||| || | |||||||||||| ||||| |||||||| | | ||| |
|
|
| T |
20974208 |
ttgcaacatagggttctgataaaactgtgctggaagcatctgagcttgtggaggatttagttgatgatggagaggcatgttaaaggatgaattgcttcca |
20974109 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagt |
217 |
Q |
| |
|
|||||||| |||| |||||||| |
|
|
| T |
20974108 |
acaaaaaacggaaaggtttgagt |
20974086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 22 - 716
Target Start/End: Complemental strand, 49049192 - 49048498
Alignment:
| Q |
22 |
gaacatattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaatttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49049192 |
gaacatattattacaccatattattgaagccatggtgaggcatcattgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaaattg |
49049093 |
T |
|
| Q |
122 |
tggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagtagta |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||| ||| |
|
|
| T |
49049092 |
tggtggcaacatttcagcttgttgagcatttggctgatgatggagataaacgttcgaggaagaagcattgccaacaaaaaatggaagagttcgagttgta |
49048993 |
T |
|
| Q |
222 |
gcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaact |
321 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||| | |
|
|
| T |
49048992 |
gcatgttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttgatctttattcattccatcaaccggacaagcccaccaaaaat |
49048893 |
T |
|
| Q |
322 |
tagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacg |
421 |
Q |
| |
|
|||||| ||||||||| | |||| ||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
49048892 |
tagcctctgtttccttgagaaaatggctcagctcatcgccaatcttcttctcggcatccaacgtgttgttgatttgagtcatctgagcattgagttcacg |
49048793 |
T |
|
| Q |
422 |
cacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattagga |
521 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49048792 |
aacgttggcattgcggtgagcctcaatgagttgcatggtgccgttgttttgtggtggtacaagagaaagatagcggtctatgaccgtatcaagattgggg |
49048693 |
T |
|
| Q |
522 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgc |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
49048692 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccacaaagggtgcaaagctcactggctttcttgaagagtccgc |
49048593 |
T |
|
| Q |
622 |
tacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac |
716 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49048592 |
tacgacgctttgagaaagtcacttgtaggttgctctcgttgctcatctttttcatttcgatcttttggcgacctcggcctttctttccactcgac |
49048498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 22 - 704
Target Start/End: Complemental strand, 49064244 - 49063562
Alignment:
| Q |
22 |
gaacatattattacaccatattattgaagccatggtgaggcatcatcgatccatcaaacaaatgaggctgcaattgcaacatagggttttgaaaaatttg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
49064244 |
gaacatattattacaccatattattgaagacatggtgaggaatcatcgagccatcaaagaaatgagtttgcaattgcaacatagcgttttgaaaaatttg |
49064145 |
T |
|
| Q |
122 |
tggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaaaaaatggaagagtttgagtagta |
221 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |
|
|
| T |
49064144 |
tggcggaaacatttcagcttgttgaggatttggttgatgatggagataaatgttcgaggatgaagtgttgccaacaaaaaatggaagagttcgagtagca |
49064045 |
T |
|
| Q |
222 |
gcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaact |
321 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| | |||| | ||||||||||||||||| |
|
|
| T |
49064044 |
gcatgctgaattacaagtttcttaagctcctccaaagctttcttaaatatttcaagttgatccctattcatcccatcaacaacacaagcccaccaaaact |
49063945 |
T |
|
| Q |
322 |
tagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacg |
421 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
49063944 |
tagcctcagtttccttgtgcaaattgctcagctcatcaccaatcttcttctcggcatccaacgtgttattgatttgagtcagctgagcattgagttcacg |
49063845 |
T |
|
| Q |
422 |
cacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattagga |
521 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | |||||||| ||||| |||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
49063844 |
cacgttggcattgcggtgagcctcaatgaattgcatggtgccatcgttttgggttgggatgagagaaagaaagcggtctatgaccgtatcaagattgggg |
49063745 |
T |
|
| Q |
522 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgc |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || || ||||||||||| ||| |
|
|
| T |
49063744 |
tgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcaacatctgcaccacaaagggtgcaaagctcacttgccttcttgaagagcccgt |
49063645 |
T |
|
| Q |
622 |
tacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
|| | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49063644 |
tatggtgctttgagaaagtaacttgcaagttgctctcgttgctaatctttttcatctcgatcttttggcggcctcggcctttc |
49063562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 239 - 704
Target Start/End: Original strand, 47840574 - 47841039
Alignment:
| Q |
239 |
tttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttg |
338 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| |||||||||| | |||| | |||| |||||||||||| | | ||| ||| |||| |
|
|
| T |
47840574 |
tttcttaacctcccccaaagccttcttgaataattcaagttggaccctattcatcccatcaacgggaccagcccaccaaaattgatcctcggtcgtcttg |
47840673 |
T |
|
| Q |
339 |
tgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggt |
438 |
Q |
| |
|
|||| | || ||||| ||| || ||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||| || ||| |||||| |
|
|
| T |
47840674 |
cgcaagtgactcagctcttcagcacgtttcttctcgatgtccagtaggtggttgatctgagtcagctgagtattgagctcacgcacattagcgctgcggt |
47840773 |
T |
|
| Q |
439 |
gagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatac |
538 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| || |||| ||||| || |||||||||||||||| ||| || |||||||| |||||||| |
|
|
| T |
47840774 |
gagcctcaatgaattgcatggtaccgttgttttgtggtggcactcgagagagataacgatctatgaccgtatcaacattggggtgaccaaatgaaaatac |
47840873 |
T |
|
| Q |
539 |
ctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaa |
638 |
Q |
| |
|
||| | | ||||||||| |||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| || || ||||| ||||| |||||| |
|
|
| T |
47840874 |
cttctccccaggtgagaaaacaacgagagcaacatctgcaccacagagggtgcaaagctcgctggctttcttgaaaagcccactacggcgcttcgagaaa |
47840973 |
T |
|
| Q |
639 |
gtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
47840974 |
gtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc |
47841039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 248 - 704
Target Start/End: Original strand, 47830499 - 47830955
Alignment:
| Q |
248 |
ctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattg |
347 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| | |||||||| | |||| | |||| |||||||||||||| | || ||| ||||| |||| ||| |
|
|
| T |
47830499 |
ctcctccaaagcctttttgaaaaattcaagttgggctctattcatcccatcaacaggaccagcccaccaaaactgactctcggtcgccttgcgcaagttg |
47830598 |
T |
|
| Q |
348 |
cttagctcatcaccaatcttcttctcggcatccagtgtgctg-ttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctca |
446 |
Q |
| |
|
|| ||| | ||| || |||||||| |||||| |||| ||||| ||||||||||||| |||||| || |||| ||||||| | |||||||||||| |
|
|
| T |
47830599 |
ctcagcccttcagcacgtttcttctccatgtccagta-gctggttgatctgagtcagctgagtattgagctcgcgcaagttggcgctacggtgagcctca |
47830697 |
T |
|
| Q |
447 |
atgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccac |
546 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| ||||| ||||| | | |
|
|
| T |
47830698 |
atgaattgcatggtaccattgttttggggtgggactcgagagagataacgatctatgaccgtatcaacattgggttggccaaatgaaaacaccttctctc |
47830797 |
T |
|
| Q |
547 |
taggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttg |
646 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || ||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
47830798 |
caggtgagaatacaacgagagcaacatctgcaccgcagagagtgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaaagtcacttg |
47830897 |
T |
|
| Q |
647 |
caggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
47830898 |
caagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc |
47830955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 389 - 704
Target Start/End: Complemental strand, 48005293 - 48004978
Alignment:
| Q |
389 |
gttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaa |
488 |
Q |
| |
|
|||||| ||||| ||||||| ||| || |||||||||||||| | |||||||||||||||||||||||||| | |||||||||| || ||| |||| |
|
|
| T |
48005293 |
gttgatctgagttagctgagtattaagctcacgcacgttggcactacggtgagcctcaatgaattgcatggtaccattgttttgggatgagactcgagag |
48005194 |
T |
|
| Q |
489 |
agatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaaggg |
588 |
Q |
| |
|
||||| || |||||||| ||||||| ||| || || ||||| ||||||||||| | | ||||||| | |||||||||||| ||||||||||||| |||| |
|
|
| T |
48005193 |
agataacgatctatgactgtatcaacattggggtggccaaatgaaaataccttctccccaggtgagtaaacaacgagagcaacatctgcaccgcagaggg |
48005094 |
T |
|
| Q |
589 |
tgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg |
688 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||||| ||||| |||||||||||||||| || ||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
48005093 |
tgcaaagctcactggctttcttgaagagaccactacggcgcttcgagaaagtcacttgcaagtggctctcgttgctcatttttttaatctcaatcttttg |
48004994 |
T |
|
| Q |
689 |
gcgacctcggcctttc |
704 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
48004993 |
gcgacctcggcttttc |
48004978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 434 - 706
Target Start/End: Complemental strand, 33477569 - 33477297
Alignment:
| Q |
434 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
533 |
Q |
| |
|
||||||||||||||||||||| | | | ||||||||||||||||| |||| ||||| |||||||||||||||| || || ||||| ||||| ||| |
|
|
| T |
33477569 |
gcggtgagcctcaatgaattgtaagatcctattgttttggggtgggacttgagatagataacggtctatgaccgtataaacatctggatggccaaatgaa |
33477470 |
T |
|
| Q |
534 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttg |
633 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||||| || |||||| |||||||||||||||||||| |||||||||||||| || ||||||||||| | |
|
|
| T |
33477469 |
aacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcgctggctttcttgaagaggccactacgacgcttcg |
33477370 |
T |
|
| Q |
634 |
agaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt |
706 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||| | |||||||| |
|
|
| T |
33477369 |
agaaagtcacttgcaaattgctctcgttgctcatttttttcatctcaattttttggcgaccttgacctttctt |
33477297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 234 - 704
Target Start/End: Complemental strand, 2540887 - 2540417
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||| | ||||||||| |||||||||| | |||| | | || |||||||||||| | || || | |
|
|
| T |
2540887 |
acaagtttcttaatctcctccaaagcctttttgaaaacttcaagttgggccctattcatcccatcaacggaaccagcccaccaaaattgagtctcattcg |
2540788 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgct-gttgatttgagtcagctgagcattgagttcacgcacgttggcgt |
432 |
Q |
| |
|
||||| |||| | ||| ||||| ||| || |||||||| |||||| ||| |||||| |||||||| ||| ||| || || ||||||||||| |
|
|
| T |
2540787 |
ccttgcgcaagtggctcagctcttcatcacgtttcttctcattgtccagt-agctggttgatctgagtcagttgaatattcagctcgcgcacgttggcac |
2540689 |
T |
|
| Q |
433 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
532 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||| | ||||||| |||| ||||| | |||||||||||||||| ||| || || ||||| || |
|
|
| T |
2540688 |
tacggtgagcctcaatgaattgcatggtaccattgtttttgagtgggactcgagagagataatgatctatgaccgtatcaacattgggttggccaaatga |
2540589 |
T |
|
| Q |
533 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgcttt |
632 |
Q |
| |
|
||||||||| | | ||||||||| | || ||||||| |||||||||| || || ||||||||||| || |||||||||||||| || ||||| ||||| |
|
|
| T |
2540588 |
aaataccttctccccaggtgagaaaataatgagagcaacatctgcaccacagagagtgcaaagctcactggctttcttgaagagcccactacggcgcttc |
2540489 |
T |
|
| Q |
633 |
gagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
2540488 |
gagaaagtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttc |
2540417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 381 - 704
Target Start/End: Complemental strand, 49045462 - 49045139
Alignment:
| Q |
381 |
agtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtggga |
480 |
Q |
| |
|
|||||| ||||||||||| ||| || | |||| || |||| ||| |||||| | ||||||||||| ||||||| ||||| |||||||| ||||||| |
|
|
| T |
49045462 |
agtgtgttgttgatttgaatcaactcaacattaagctcacacactttggcgctacggtgagcctcgatgaattatgtggtgctattgttttgcggtggga |
49045363 |
T |
|
| Q |
481 |
cgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcacc |
580 |
Q |
| |
|
| | | |||||| | |||| ||| ||||||| ||| |||||||| || |||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
49045362 |
ccccaaagagatagtgatcta-gactgtatcaacatttggatgaccgaaagaaaataccttttcactaggtgagaatacaacgagagcaacatctacacc |
49045264 |
T |
|
| Q |
581 |
gcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcagg-ttgctctcgttgctcatctttttcatctc |
679 |
Q |
| |
|
||||||||||||| || || ||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
49045263 |
acaaagggtgcaaaattcactgactttcttgaagagcccactacgacgctttgagaaagtcacttgaaggtttgctctcgttgctcatctttttcatctc |
49045164 |
T |
|
| Q |
680 |
gatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
49045163 |
aatcttttggcgaccacgacctttc |
49045139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 433 - 716
Target Start/End: Complemental strand, 34506708 - 34506425
Alignment:
| Q |
433 |
tgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaagga |
532 |
Q |
| |
|
|||||||||| |||||||||||| | | | ||||||||||||||||| |||| |||||||| ||||||| ||| |||| || || || ||||| || |
|
|
| T |
34506708 |
tgcggtgagcgtcaatgaattgccagatcccattgttttggggtgggacctgagatagatagcgatctatgatcgtctcaacatctgggtgcccaaatga |
34506609 |
T |
|
| Q |
533 |
aaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgcttt |
632 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||| || |||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
34506608 |
aaacaccttatcactaggtgagaatacaatgagagcaatatatgcaccacaaagggtgcaaagctcactagctttcttgaagaggccactacggcgcttc |
34506509 |
T |
|
| Q |
633 |
gagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac |
716 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||| ||| |||||| |||||||| |
|
|
| T |
34506508 |
gagaaagtcacttgcaaattgctctcgttgctcatttttttcatctcaattttttggcgaccttggcttttctttccactcgac |
34506425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 438 - 704
Target Start/End: Original strand, 47825973 - 47826240
Alignment:
| Q |
438 |
tgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaata |
537 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||| ||||||||| |||| ||||| || ||||||| |||||||| ||| || || ||||| ||||||| |
|
|
| T |
47825973 |
tgagccttaatgaattgcatggtaccattgtttttgggtgggacttgagagagataacgatctatgagcgtatcaacattgggttggccaaatgaaaata |
47826072 |
T |
|
| Q |
538 |
cctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaa |
637 |
Q |
| |
|
|||| | | ||||||||| |||||||||||| |||||||||| || | ||| |||||||| ||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
47826073 |
ccttctctccaggtgagaaaacaacgagagcaacatctgcaccacagatggtacaaagctcactagctttcttgaagagcccactacggcgcttcgagaa |
47826172 |
T |
|
| Q |
638 |
agtcacttgcaggttgctctcgttgctca-tctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
47826173 |
agtcacttgcaagttgctctcgttgctcattttttttcatctcaatcttttggaaacctcggcttttc |
47826240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 390 - 688
Target Start/End: Complemental strand, 33467559 - 33467264
Alignment:
| Q |
390 |
ttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaa |
489 |
Q |
| |
|
||||||||||||||| |||||| || || |||| ||||| | || | |||||||||||||||||| | | | ||||||| ||||| || ||| | |
|
|
| T |
33467559 |
ttgatttgagtcagcatagcattaagctcgcgcaatttggcactacgattagcctcaatgaattgcatagggccactgttttgaggtggtacttgag--a |
33467462 |
T |
|
| Q |
490 |
gatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggt |
589 |
Q |
| |
|
|||| || |||||||||||||||| ||| || |||||||| ||||| ||||| |||||||||||||||||| ||||||| || |||||| |||||||| |
|
|
| T |
33467461 |
gataacgatctatgaccgtatcaacatttgggtgaccaaatgaaaacaccttctcactaggtgagaatacaatgagagcaatatatgcaccacaaagggt |
33467362 |
T |
|
| Q |
590 |
gcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg |
688 |
Q |
| |
|
|||||||||||||||||||||||| || || | | | |||| ||||| |||||||||| |||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
33467361 |
gcaaagctcgctagctttcttgaataggccattgcaatgcttcgagaatgtcacttgcaagttgctctcgttgctcat-tttttcatctcaattttttg |
33467264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 47840406 - 47840535
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||| |||||||||| ||| ||||| |||| |||||||||||| ||||| ||||||||| | || ||| |
|
|
| T |
47840406 |
ttgcaacatagggttctgaaaaaactgtgttggatacatttgagcctgtggaggatttggttgatgatggagagggatgttagaggatgaaccatttcca |
47840505 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagca |
224 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
47840506 |
acaaaaaatggaagagtttgagtaggagca |
47840535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 2541050 - 2540908
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| |||| ||||||| |||| ||||| ||||||||| | || ||| |
|
|
| T |
2541050 |
ttgcaacatagggttctgaaaaagttgtgctggaaacatttgagtttgccgaggatttggttgatgatcgagaggcatgttagaggatgaaccatttcca |
2540951 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||| ||||||| |
|
|
| T |
2540950 |
acaaaaaatggaaaggtttgagtaggagcagcctggattacaa |
2540908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 47825606 - 47825748
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||||||| ||| ||||| ||| ||||||| |||| ||||| |||||||| | || ||| |
|
|
| T |
47825606 |
ttgcaacatggggttttgaaaaaactgtgttggaaacatttgagtttgcggaggatttgattgatgatcgagaggcatgttaaaggatgaaccatttcca |
47825705 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||| ||||||| |
|
|
| T |
47825706 |
acaaaaaatggaaagatttgagtaggagcactctggattacaa |
47825748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 47830322 - 47830451
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
|||||||||||| || |||||| |||| |||||||||||||| ||| ||||| |||| |||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
47830322 |
ttgcaacataggattctgaaaatactgtgttggaaacatttgagtttgcggaggatttggttgatgatggagaggcatgttagaggatgaactattgcca |
47830421 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagca |
224 |
Q |
| |
|
|||||||| ||| |||||||||| |||| |
|
|
| T |
47830422 |
ccaaaaaattgaatggtttgagtaggagca |
47830451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 48005448 - 48005363
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa |
319 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||||||||||||| |||| ||||| | |||| | |||| | |||||||||| |
|
|
| T |
48005448 |
acaagtttcttaagctcctccaaatcattcttgaataattcaagttggaccctgttcatcccatcaacgggaccatcccaccaaaa |
48005363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 49045605 - 49045512
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcct |
327 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||| | || | |||||||||||||||||| | ||||| |
|
|
| T |
49045605 |
acaagtttcttaagctccaacaaaatcttcttgaataattcaagttgtgccctattcatcccattaatcggacaagcccaccaaaattgagcct |
49045512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 47825780 - 47825854
Alignment:
| Q |
245 |
aagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa |
319 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||| |||||| |||| | || | | |||| |||||||||||| |
|
|
| T |
47825780 |
aagcgcctccaaagcctttttgaaaaattcaagttggtccctactcatcccattaacaggaccagcccaccaaaa |
47825854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 49045764 - 49045659
Alignment:
| Q |
99 |
aacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgccaacaa |
198 |
Q |
| |
|
|||||| |||| |||||||||||||| | ||| || | || |||||||||| ||||||||| ||||||| ||||| |||||| || | || |||||| |
|
|
| T |
49045764 |
aacatatggttatgaaaaatttgtggcgaaaatatctcagtttgttgaggatttggctgataatggagagggatgttagaggataaatcatttccaacag |
49045665 |
T |
|
| Q |
199 |
aaaatg |
204 |
Q |
| |
|
|||||| |
|
|
| T |
49045664 |
aaaatg |
49045659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 331 - 706
Target Start/End: Complemental strand, 39233 - 38858
Alignment:
| Q |
331 |
tttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggc |
430 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||||||||||| || || | ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
39233 |
tttccttgcgcaaattgctcagctcatcaccaattttcttctcggcatgcatcatgttattgatttgagtcaactgagcattgagttcgcgcacgttggc |
39134 |
T |
|
| Q |
431 |
gttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaag |
530 |
Q |
| |
|
||||||| |||||||||||||||||| ||| | |||||||||||||||||||| |||||||| | || |||||||||||||||||| || ||||||||| |
|
|
| T |
39133 |
attgcggttagcctcaatgaattgcatagtgccattgttttggggtgggacgagggaaagataacagtatatgaccgtatcaagattggggtgaccaaag |
39034 |
T |
|
| Q |
531 |
gaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgct |
630 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||||||| |||||||| | || |
|
|
| T |
39033 |
gaaaatagctttccactaggtgagaatacaacaagagcagcatctgcaccacaaagggtgcaaatctcaccggctttcttgaagagcccgctacggcact |
38934 |
T |
|
| Q |
631 |
ttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt |
706 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38933 |
ttgagaaagtaacttgcaagttgctctcgtcactcatctttttcatctcgatcttttggcgaccccggcctttctt |
38858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 234 - 704
Target Start/End: Complemental strand, 35101 - 34631
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggttt |
333 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||||||||||||||| |||||||||| | | || ||||||||||||||||| | ||||| | |
|
|
| T |
35101 |
acaagtttcttaagctccactaaaatcttcttgaataattcaagttgagccctattcatcccaccaattggacaagcccaccaaaattgagccttgaacg |
35002 |
T |
|
| Q |
334 |
ccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgtt |
433 |
Q |
| |
|
||||| |||| ||| | ||||||| || |||| ||||| | ||||||||| | ||||||||| ||| || |||||| || |||| ||| ||||| | |
|
|
| T |
35001 |
ccttgcacaaaaggctcaactcatcatcactctttttctcctcgtccagtgtgttattgatttgaatcaactcagcattaagctcacacactttggcact |
34902 |
T |
|
| Q |
434 |
gcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaa |
533 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| |||||||| || ||| |
|
|
| T |
34901 |
atggtgagcctcaatgaattccatggtgctgttgttttgtggtgggaccccagagagatagcgatctataaccgtatcaacatttggatgaccgaaagaa |
34802 |
T |
|
| Q |
534 |
aatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttg |
633 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | ||||||| |||||||| ||||||||||||| |
|
|
| T |
34801 |
aatactttttcactaggtgagaatacaacgagagcaacatctacaccacaaagggtgcaaagctcattgactttcttaaagagtcccctacgacgctttg |
34702 |
T |
|
| Q |
634 |
agaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttc |
704 |
Q |
| |
|
| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| || |||||| |
|
|
| T |
34701 |
acaaagtcacttgaaggttactcttgttgctcatctttttcatctcgatcttttggcaaccacgacctttc |
34631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 35265 - 35143
Alignment:
| Q |
94 |
attgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcc |
193 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||| || |||||||||| ||||||||| ||||||| ||||| |||||| || | || || |
|
|
| T |
35265 |
attgcaatatagggtaatgaaaaaattgtggtggaaacatttcagtttgttgaggatttggctgataatggagagggatgttagaggataaatcattacc |
35166 |
T |
|
| Q |
194 |
aacaaaaaatggaagagtttgag |
216 |
Q |
| |
|
| ||||||||| || |||||||| |
|
|
| T |
35165 |
agcaaaaaatgaaaaagtttgag |
35143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 239 - 716
Target Start/End: Original strand, 16776357 - 16776834
Alignment:
| Q |
239 |
tttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttg |
338 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||| || ||||||| | |||| | |||| |||||||||||| | ||||| ||| ||||| |
|
|
| T |
16776357 |
tttcttagtctcctccaaagcctttttgaaaaattcaagttgggccatattcatcccatcaacgggaccagcccaccaaaattgagcctcggtcgccttg |
16776456 |
T |
|
| Q |
339 |
tgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctg-ttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcgg |
437 |
Q |
| |
|
|||| | || ||||| ||| || |||||||| |||||| |||| ||||| ||||||||||| | |||||| |||| |||||||||||||||| |
|
|
| T |
16776457 |
cgcaagtgactcagctcttcagcacgtttcttctccatgtccagta-gctggttgatctgagtcagctgggtattgagctcacacacgttggcgttgcgg |
16776555 |
T |
|
| Q |
438 |
tgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaata |
537 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||| ||| || || ||||| ||||||| |
|
|
| T |
16776556 |
tgagcctcaatgaattgcatggtaccattgttttggggtgggactcgagagagataacgatctatgaccgtatcaatattgggttggccaaatgaaaata |
16776655 |
T |
|
| Q |
538 |
cctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaa |
637 |
Q |
| |
|
|||| | | ||||||||| ||||| |||||| |||||||||| || || ||||||||||| || |||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
16776656 |
ccttctccccaggtgagaaaacaacaagagcaacatctgcaccacagagagtgcaaagctcactggctttcttgaagagcccactacggcgcttcgagaa |
16776755 |
T |
|
| Q |
638 |
agtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttcttctcactcgac |
716 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
16776756 |
agtcacttgcaagttgctctcgttgctcatttttttcatctcaatcttttggcgacctcggcttttcctttcactcgac |
16776834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 16776188 - 16776331
Alignment:
| Q |
94 |
attgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcc |
193 |
Q |
| |
|
|||| |||||||| || ||||||| ||||| |||||||||||| | ||| |||| |||| |||||||||||| ||||| ||||||||| | || || |
|
|
| T |
16776188 |
attgtaacataggattctgaaaaaattgtgctggaaacatttgggtttgcgaaggatttggttgatgatggagaggcatgttagaggatgaaccatttcc |
16776287 |
T |
|
| Q |
194 |
aacaaaaaatggaagagtttgagtagtagcatgctgaattacaa |
237 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
16776288 |
aacaaaaaatggaaaggtttgagtaggagcaccctgaattacaa |
16776331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 409 - 695
Target Start/End: Complemental strand, 19988280 - 19987994
Alignment:
| Q |
409 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
508 |
Q |
| |
|
|||| ||||||||||| | || || |||| ||| || ||||||||| || |||||| |||||||| ||| || ||||| ||||| || ||||||||||| |
|
|
| T |
19988280 |
cattaagttcacgcacactagcattacggtaagcttcgatgaattgcgtgatgtcgtcgttttgggttggaaccagagagagataacgatctatgaccgt |
19988181 |
T |
|
| Q |
509 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttc |
608 |
Q |
| |
|
|||| ||| || |||||||| ||||| ||||| ||| ||||||||||| || |||||| ||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
19988180 |
ttcaacatttgggtgaccaaatgaaaagaccttctcaccaggtgagaatataattagagcaacatatgcaccacacagggtgcaaagctcgctagctttc |
19988081 |
T |
|
| Q |
609 |
ttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttggcgacct |
695 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19988080 |
ttgaagagcccactacgacgcttcgagaaagtcacttgaaggttgctttcattgctcatctttttcatctcaatcttttggcgacct |
19987994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 409 - 688
Target Start/End: Original strand, 22700346 - 22700625
Alignment:
| Q |
409 |
cattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtgggacgagagaaagatagcggtctatgaccgt |
508 |
Q |
| |
|
||||||| || ||||| ||||| | |||| | |||||| ||||||||| |||| | ||||||||||| || |||| ||| | || ||||||||||| |
|
|
| T |
22700346 |
cattgagctcgcgcacattggctctacggtaatcctcaagtaattgcatgatgtcatcattttggggtggaacttgagagagaaaacgatctatgaccgt |
22700445 |
T |
|
| Q |
509 |
atcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttc |
608 |
Q |
| |
|
|||| ||| |||| |||||| ||||||||||| ||||||||||||||| || |||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
22700446 |
ttcaacatttggataaccaaatgaaaataccttctcactaggtgagaatataattagagcaatatatgcaccacaaagggtgcaaagctcgctagctttt |
22700545 |
T |
|
| Q |
609 |
ttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcatctttttcatctcgatcttttg |
688 |
Q |
| |
|
|| ||||| || |||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
22700546 |
ttaaagagcccaatacggcgctttgagaaagtcacttgcaagttgctttcattgctcatctttttcatctcaatcttttg |
22700625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 468 - 697
Target Start/End: Complemental strand, 22002063 - 22001834
Alignment:
| Q |
468 |
ttttggggtgggacgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagag |
567 |
Q |
| |
|
||||||||| |||| |||| ||||| | ||||||||||| |||| ||| || |||||||| |||||||||||| |||| |||||||| | | |||| |
|
|
| T |
22002063 |
ttttggggtaggacctgagagagataatgatctatgaccgtttcaacatttgggtgaccaaatgaaaataccttttcacttggtgagaagattattagag |
22001964 |
T |
|
| Q |
568 |
cagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcaggttgctctcgttgctcat |
667 |
Q |
| |
|
|| ||| |||||| ||||| |||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| ||| |||| || |||||||| |
|
|
| T |
22001963 |
caacatatgcaccacaaagactgcaaagctcgctagctttcttgaagagcccactacggcgcttcgagaaagtcacttgtaggctgctttcattgctcat |
22001864 |
T |
|
| Q |
668 |
ctttttcatctcgatcttttggcgacctcg |
697 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |
|
|
| T |
22001863 |
ctttttcatctcaatcttttgccgacctcg |
22001834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 19988440 - 19988370
Alignment:
| Q |
249 |
tcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa |
319 |
Q |
| |
|
||||||||||||||||||||| || ||||||| || ||||||| |||||| ||||||| ||||||||| |
|
|
| T |
19988440 |
tcctccaaagccttcttgaatgatccaagttggaccatattcatcctatcaaagggacaagtccaccaaaa |
19988370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 5e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 381 - 646
Target Start/End: Complemental strand, 22650504 - 22650239
Alignment:
| Q |
381 |
agtgtgctgttgatttgagtcagctgagcattgagttcacgcacgttggcgttgcggtgagcctcaatgaattgcatggtgtcgttgttttggggtggga |
480 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||| |||| ||| |||| | | || ||||||||||| |||| ||||||| ||||||||| | ||||| |
|
|
| T |
22650504 |
agtgtgttgttgatttgaatcaacatagcattgagctcacacactttggtgctacgatgagcctcaataaattctatggtgttgttgttttgcgatggga |
22650405 |
T |
|
| Q |
481 |
cgagagaaagatagcggtctatgaccgtatcaagattaggatgaccaaaggaaaatacctttccactaggtgagaatacaacgagagcagcatctgcacc |
580 |
Q |
| |
|
| ||| |||||||| ||||||||| |||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22650404 |
ccccagagagatagcgatctatgaccatatcaacatttggatgaccgaaagaaaatacctttttactaggtgagaatacaacgagagcaacatctacacc |
22650305 |
T |
|
| Q |
581 |
gcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttg |
646 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
22650304 |
acaaagggtgcaaagctcattgactttcttgaagagtccgctacgatgctttaagaaagtcacttg |
22650239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 551 - 706
Target Start/End: Complemental strand, 22652080 - 22651925
Alignment:
| Q |
551 |
tgagaatacaacgagagcagcatctgcaccgcaaagggtgcaaagctcgctagctttcttgaagagtccgctacgacgctttgagaaagtcacttgcagg |
650 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||| || | ||| |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22652080 |
tgagaatacaacgagagcaacatctgcaccacaaagggtgtaaagttcatcggattttttgaagagtccgctacgacgctttaagaaagttacttgcagg |
22651981 |
T |
|
| Q |
651 |
ttgctctcgttgctcatctttttcatctcgatcttttggcgacctcggcctttctt |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
22651980 |
ttgctctcgttgctcatctttttcatctcgatcatttggcgacctcagcctttctt |
22651925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 22650814 - 22650676
Alignment:
| Q |
95 |
ttgcaacatagggttttgaaaaatttgtggtggaaacatttgagcttgttgaggaattggctgatgatggagataaatgttcgaggatgaagcgttgcca |
194 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||||| | | |||||||||| ||||||||| ||||||| ||||| |||||| || | || ||| |
|
|
| T |
22650814 |
ttgcaacatagggttatgaaaattttgtggcgaaaacatctcaatttgttgaggatttggctgataatggagagggatgttagaggataaatctttacca |
22650715 |
T |
|
| Q |
195 |
acaaaaaatggaagagtttgagtagtagcatgctgaatt |
233 |
Q |
| |
|
||| ||||||||| ||| |||| ||||||| ||||||| |
|
|
| T |
22650714 |
acagaaaatggaaaagtgtgagcagtagcaccctgaatt |
22650676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 22650651 - 22650558
Alignment:
| Q |
234 |
acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaacttagcct |
327 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||||||||| ||| || ||||||| | |||| |||| ||||||||||||| | ||||| |
|
|
| T |
22650651 |
acaagtttcttaagctccaccaacatcttcttgaataattcaagctgagccttattcattccatcaatcggataagcccaccaaaattgagcct |
22650558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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