View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_10 (Length: 381)
Name: NF16264_low_10
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 28 - 362
Target Start/End: Complemental strand, 42550165 - 42549831
Alignment:
| Q |
28 |
aatgaataattaagatattttcttcggttctttgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattctcccagcaacggagtctca |
127 |
Q |
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| T |
42550165 |
aatgaataattaagatattttcttcggttctttataacaattgagaaaaatggagaaaatcccacttgaaagaattcattctcccagcaacggagtctca |
42550066 |
T |
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| Q |
128 |
tatcctatgtgtgcgcgactcctcttcttttaatgnnnnnnnaataacaatgcgatccagataaggttgagttaagtggcctcaaaatctaatactgaat |
227 |
Q |
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| T |
42550065 |
tatccaatgtgtgcgcgactcctcttcttttaatgtttttttaataacaatgcgatccagataaggttgagttaagtggcctcaaaatctagtactgaat |
42549966 |
T |
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| Q |
228 |
gaaacaaagatggaggttgctgaatatggtgaaccttttgattttgtttgatttttatgggttcactattttagatatgtgtatctgtagtgttgttcat |
327 |
Q |
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| T |
42549965 |
gaaacaaagacggaggttgctgaaaatggtgaaccttttgattttgtttgatttttatgggttcactattttagatatgtgtatctgcagtgttgttcat |
42549866 |
T |
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| Q |
328 |
tagacccattttgggattatttgatggtgtagaga |
362 |
Q |
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| T |
42549865 |
tagacccattttgggattatttgatggtgtagaga |
42549831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 18373070 - 18373022
Alignment:
| Q |
60 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattc |
108 |
Q |
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| T |
18373070 |
tgtaacaattgagaaaaatggaaaaaattccacttgaaagaattcattc |
18373022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 30364346 - 30364394
Alignment:
| Q |
60 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattc |
108 |
Q |
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| T |
30364346 |
tgtaacaattgagaaaaatggagaaaatttcacttgagagaatccattc |
30364394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 6734443 - 6734492
Alignment:
| Q |
60 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattct |
109 |
Q |
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| T |
6734443 |
tgtaagaattgaaaaaaatggagaaaattccacttaaaagaatacattct |
6734492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 15390342 - 15390390
Alignment:
| Q |
60 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattc |
108 |
Q |
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| T |
15390342 |
tgtaacaattgagaaaaatggagaaaattatacttgagagaatccattc |
15390390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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