View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16264_low_14 (Length: 332)

Name: NF16264_low_14
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16264_low_14
NF16264_low_14
[»] chr4 (4 HSPs)
chr4 (19-315)||(25952189-25952485)
chr4 (207-257)||(21592392-21592442)
chr4 (199-255)||(25319007-25319063)
chr4 (216-256)||(44845723-44845763)
[»] chr5 (2 HSPs)
chr5 (199-259)||(29922854-29922914)
chr5 (199-255)||(10898682-10898738)
[»] chr3 (2 HSPs)
chr3 (199-258)||(48089455-48089514)
chr3 (207-255)||(48411018-48411066)
[»] chr1 (2 HSPs)
chr1 (209-249)||(15477824-15477864)
chr1 (211-243)||(45660670-45660702)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 25952189 - 25952485
Alignment:
Q  19 catctccaagtaaaaaatcctaacacaggatgatcttcagggtaattctggaaataaaactcaggtttctcgccttggtcaataaaagtgcctgccatag 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952189 catctccaagtaaaaaatcctaacacgggatgatcttcagggtaattctggaaataaaactcaggtttctcgccttggtcaataaaagtgcctgccatag 25952288  T
Q  119 aaatttttctttagtgcatattggcattcgcttttgggagagctaaaattgatttgacgagttaaaaatgactaagataagtttggtggttctcgagtat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25952289 aaatttttctttagtgcatattggcattcgcttttgggagagctaaaattgatttgaggagttaaaaatgactaagataagtttggtggttctcgagtat 25952388  T
Q  219 aattaatttttgctcaagaattgattctaacttgaagctaacgtttgtaattgttgcctttgcttgtgatttttagactcaaatttattgttcacct 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25952389 aattaatttttgctcaagaattgattctaacttgaagctaacgtttgtaattgttgcctttgattgtgatttttagactcaaatttattgttcacct 25952485  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 21592392 - 21592442
Alignment:
Q  207 gttctcgagtataattaatttttgctcaagaattgattctaacttgaagct 257  Q
    |||||||||||||||| |||||| | || || |||||||||||||||||||    
T  21592392 gttctcgagtataattgatttttccgcaggagttgattctaacttgaagct 21592442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 25319007 - 25319063
Alignment:
Q  199 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaag 255  Q
    ||||||| | ||||||||| |||| |||||  ||| |||||||||||||||||||||    
T  25319007 gtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaag 25319063  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 44845723 - 44845763
Alignment:
Q  216 tataattaatttttgctcaagaattgattctaacttgaagc 256  Q
    ||||||| |||||| ||| ||||||||||||||||||||||    
T  44845723 tataattgatttttcctccagaattgattctaacttgaagc 44845763  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 29922854 - 29922914
Alignment:
Q  199 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaagctaa 259  Q
    ||||||| ||||||||| | |||| |||||  |||||||||||||| ||||||||||||||    
T  29922854 gtttggttgttctcgagcagaattgattttgtctcaagaattgattttaacttgaagctaa 29922914  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 10898682 - 10898738
Alignment:
Q  199 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaag 255  Q
    ||||||| | ||||||||| |||| |||||  ||| |||||||||||||||||||||    
T  10898682 gtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttgaag 10898738  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 48089514 - 48089455
Alignment:
Q  199 gtttggtggttctcgagtataattaatttttgctcaagaattgattctaacttgaagcta 258  Q
    ||||||| | ||||||||||||||||||||  ||||||||||||||| ||| | ||||||    
T  48089514 gtttggttgctctcgagtataattaattttgcctcaagaattgattcaaaccttaagcta 48089455  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 48411018 - 48411066
Alignment:
Q  207 gttctcgagtataattaatttttgctcaagaattgattctaacttgaag 255  Q
    ||||||||||| | ||||||||  ||| |||||||||||||||||||||    
T  48411018 gttctcgagtagatttaattttgcctctagaattgattctaacttgaag 48411066  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 15477864 - 15477824
Alignment:
Q  209 tctcgagtataattaatttttgctcaagaattgattctaac 249  Q
    ||||||||||||||||||||| ||| | |||||||||||||    
T  15477864 tctcgagtataattaatttttcctccataattgattctaac 15477824  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 45660702 - 45660670
Alignment:
Q  211 tcgagtataattaatttttgctcaagaattgat 243  Q
    ||||||||||||||||||| |||||||||||||    
T  45660702 tcgagtataattaatttttcctcaagaattgat 45660670  T

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