View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_17 (Length: 305)
Name: NF16264_low_17
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 52030696 - 52030978
Alignment:
| Q |
18 |
ggttacaatgataacaattcaggttgcaacgcttcctattggtcgattcatggctaaggtgcttcctacaaaaaagtttcggatcattggttttggagag |
117 |
Q |
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| T |
52030696 |
ggttacaatgataacaattcaggttgcaacgcttcctattggtcgattcatggctaaggtgcttcctacaaaaaagtttcggatcattggttttggagag |
52030795 |
T |
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| Q |
118 |
agagagttttcgttaaatccgggtccttttaacgtgaaagaacacgtgcttatttccatgtttgcaaatgctggtgctgcgtttgggagtggcactgctt |
217 |
Q |
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| T |
52030796 |
agagagttttcgttaaatccgggtccttttaacgtgaaagagcacgtgcttatttccatgtttgcaaatgctggtgctgcgtttgggagtggcactgctt |
52030895 |
T |
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| Q |
218 |
atgctctcagtattgttgatatcattcgtgtattttattacaggaagattacctttcttaccagttggattcttcttctcact |
300 |
Q |
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| T |
52030896 |
atgctctcagtattgttgatatcattcgtgtattttattacaggaagattacctttcttaccagttggattcttgttctcact |
52030978 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 36900259 - 36900340
Alignment:
| Q |
123 |
gttttcgttaaatccgggtccttttaacgtgaaagaacacgtgcttatttccatgtttgcaaatgctggtgctgcgtttggg |
204 |
Q |
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||||||||| || || ||||| |||||| |||| ||||| || |||||| |||| |||||||||||||| |||||||||||| |
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| T |
36900259 |
gttttcgtttaacccaggtccgtttaacatgaaggaacatgttcttattaccatatttgcaaatgctggggctgcgtttggg |
36900340 |
T |
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