View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_18 (Length: 304)
Name: NF16264_low_18
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 2572718 - 2572990
Alignment:
| Q |
20 |
atgacatggcataaactttaactacaattttgcactaggcccaatataactttatacaatgctctatatatgtgagtgttttttgatataaattctttat |
119 |
Q |
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| T |
2572718 |
atgacatggcataaactttaactacaattttgcactaggcccaatataactttatacactgctctatatatgtgagtgttttttgatataaattctttac |
2572817 |
T |
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| Q |
120 |
gaacaatcatgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttac |
219 |
Q |
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| T |
2572818 |
aaacaatcatgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttac |
2572917 |
T |
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| Q |
220 |
agtgagcttgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctc |
292 |
Q |
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| T |
2572918 |
agtgagcttgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctc |
2572990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 292
Target Start/End: Original strand, 2562843 - 2563007
Alignment:
| Q |
128 |
atgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtgagct |
227 |
Q |
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| T |
2562843 |
atgtgtattatatatctttggcaggtgaatttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagtcagct |
2562942 |
T |
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| Q |
228 |
tgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctc |
292 |
Q |
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| T |
2562943 |
tattgagttgggctgctgttgaatatgaaagtgagatttcttcagttaaccagattggttatctc |
2563007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 28582497 - 28582445
Alignment:
| Q |
149 |
caggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttgg |
201 |
Q |
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|||||||| ||||| ||||| ||||| || ||||||||| ||||||||||||| |
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| T |
28582497 |
caggtagacttggtgggagggtactatgatgcaggtgatcatgtgaagtttgg |
28582445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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