View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_21 (Length: 294)
Name: NF16264_low_21
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 28153421 - 28153154
Alignment:
| Q |
19 |
gcaattgcctattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatctctactatcctcaattgtgttaaactcatt |
118 |
Q |
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| T |
28153421 |
gcaattgcctattcacactttgaatttgtttgattttctggatgtaatttgatggagatgataaaccatctctactatcctcaattgtgttaaactcatt |
28153322 |
T |
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| Q |
119 |
aataaataaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggaga |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153321 |
aataaataaggtcgtttgtggatcaatattatgaaccttgttaaatgctttggctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggaga |
28153222 |
T |
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| Q |
219 |
ttttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattcattctttt |
286 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28153221 |
ttttcattaacaacatcccaaccaataacttggcccttgtatcttcccacaacggaattcattctttt |
28153154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 8023260 - 8023520
Alignment:
| Q |
19 |
gcaattgcctattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatctctactatcctcaattgtgttaaactcatt |
118 |
Q |
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||||||| ||||||||||||||||| | |||||| |||| || || ||| || | |||||||||||||| |||||||||||| || ||| | ||||| |
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| T |
8023260 |
gcaattgactattcacactttgaatctctttgatcttctcgatatacgttggcggggttgataaaccatctcgactatcctcaatggtattatattcatt |
8023359 |
T |
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| Q |
119 |
aataaataaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggaga |
218 |
Q |
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| T |
8023360 |
catgaacaaagtagtttgcccgtcaatgttgtgaacctcattaaacatcctagctgaaaagttttgtcccaatttactttcgaagaatgagaaatgtagg |
8023459 |
T |
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| Q |
219 |
ttttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattca |
279 |
Q |
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|||||||||||||||||||||||||||| || || ||||||||| ||||| |||||||| |
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| T |
8023460 |
ttttcattaacaacatcccaaccaataagctgacccttgtatcttgacacaatggaattca |
8023520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 21543713 - 21543814
Alignment:
| Q |
176 |
aaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaa |
275 |
Q |
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||||| |||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||| | ||||||||| |||||| ||| |
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| T |
21543713 |
aaaattttgtcctagtttactttcaaagaatgaggaatgcagattttcattaataacatcccaaccaattagctggtccttgtatcttgacacaacagaa |
21543812 |
T |
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| Q |
276 |
tt |
277 |
Q |
| |
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|| |
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| T |
21543813 |
tt |
21543814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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