View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_25 (Length: 237)
Name: NF16264_low_25
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36457852 - 36457632
Alignment:
| Q |
1 |
tagcataaactccagccgcagaatgtcattttcggtctgctacctattttcgatgacatccatttccaactaagagattgaacacattaggaatactgtc |
100 |
Q |
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| T |
36457852 |
tagcataaactccagccagagaatgtcattttcggtctgctacctattttcgacgacattcatttccaactaagagattgaacacattaggaatactgtc |
36457753 |
T |
|
| Q |
101 |
cataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttcactccccataaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457752 |
cataaaaattatattatttctagcaatccatagagaccaaacaaccgctcaccacaacaacagaccgagcgagccttttgtttttcactccccataaaga |
36457653 |
T |
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| Q |
201 |
cacattatgctgcagcagatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36457652 |
cacattatgctgcagcagatg |
36457632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 11628377 - 11628456
Alignment:
| Q |
83 |
cacattaggaatactgtccataaaaattatattatttctagcaatccatagagatcaaacaaccgctcaccacaacaaca |
162 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| | ||||||||| |
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| T |
11628377 |
cacattagaaatattgtccataaaaattatattatttctagcaatatatagagaccaaacaacctctcccaacaacaaca |
11628456 |
T |
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