View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_3 (Length: 595)
Name: NF16264_low_3
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 47735223 - 47734668
Alignment:
| Q |
18 |
gttggtgcattatcacattatgcagctactcttaaaatgcttgaatggcgtgacacttttgggtgtgacaaggcttaaattaaggatctatgtttcacaa |
117 |
Q |
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| T |
47735223 |
gttggtgcattatcacattatgcagctactcttaaaatgcttgaatggcgtgacacttttgggtgtgacaaggcttaaattaaggatctatgtttcacaa |
47735124 |
T |
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| Q |
118 |
catatatatatgtatgtatgtatgtttgt----gcacagcatgagatggattctctgcattgttggatttcaagcaactgtgagataattacaactcaat |
213 |
Q |
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| T |
47735123 |
catatatatatgtatgtatgtatgtatgtatgtgcacagcatgagatggattctctgcattgttggatttcaagcaactatgagataattacaactcaat |
47735024 |
T |
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| Q |
214 |
tcagaggcttatgccattcatcaaaatgttaaatagtatttgttgtcttcttcattctatcaactgagtctaaactctcatgtatttttctttctccccc |
313 |
Q |
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| T |
47735023 |
tcagaggcttatgccattcatcaaaatgttaaatagtatttgttgtcttcttcattctatcaactgagtctaaactctcatgtatttttctttctccccc |
47734924 |
T |
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| Q |
314 |
tcccatttgaatttgttattcaatatattattgtacctagaatttattattcaaatagtatgttaatgtgttactcttagaaacactagtttaggtatgc |
413 |
Q |
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| T |
47734923 |
tcccatttgaatttgttattcaatatattattgtacctagaatttattattcaaaaagtatgttattgtgttactcttagaaacactagtttaggtatgc |
47734824 |
T |
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| Q |
414 |
aagtgttctactgattatcttcaaattaatggtatgagttaggaatcatctcagtttaatggcttctgagtgaatcgctaagttagaccttggagttgaa |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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| T |
47734823 |
aagtgttctactgattatcttcaaattaatggtatgagttaggaatcatctcagtttattg----------gaatcgctaagttagaccttgaagttgaa |
47734734 |
T |
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| Q |
514 |
gcaatcaagtaatttgtatatgaaagttatcctaattttaaaatgatcaatgaaaaatgaaaatat |
579 |
Q |
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| T |
47734733 |
gcaatcaagtaatttgtatatgaaagttatcgaaattttaaaatgatcaatgaaaaatgaaaatat |
47734668 |
T |
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