View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16264_low_4 (Length: 476)
Name: NF16264_low_4
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 21559112 - 21558770
Alignment:
| Q |
1 |
ttgacacaaacatttccttcatttactttctactagtttcacttcatcaaatcacttagtcatgggagacaatgttgtagtatccaatatggagctagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21559112 |
ttgacacaaacatttccttcatttactttctagtagtttcacttcatcaaatcacttagtcatgggagacaatgttgtagtatccaatatggagctagag |
21559013 |
T |
|
| Q |
101 |
aggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcacaggtaccctcttttgctatttattttatcaagcctcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21559012 |
aggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcacaggtaccctcttttgctatttattttatcaagcctcttt |
21558913 |
T |
|
| Q |
201 |
tgttaatttaactcttgtttttcatatacttttatattgagctacttcatcttcctcctattctttttctttctccatttatgnnnnnnnttaacttcca |
300 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21558912 |
tgttaatttaattcttgattttcatatacttttatattgagctacttcatcttcctcctattctttttctttctccatttatgaaaaaaattaacttcca |
21558813 |
T |
|
| Q |
301 |
agctcatttttcaatcaaaagagtataaatatatgaccactac |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21558812 |
agctcatttttcaatcaaaagagtataaatatatgaccactac |
21558770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 20855960 - 20855855
Alignment:
| Q |
62 |
atgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcac |
161 |
Q |
| |
|
|||| ||| |||||||| || |||||| ||||||| |||| |||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20855960 |
atggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagctatgccaacaattcccaagcac |
20855861 |
T |
|
| Q |
162 |
aggtac |
167 |
Q |
| |
|
|||||| |
|
|
| T |
20855860 |
aggtac |
20855855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 21558716 - 21558648
Alignment:
| Q |
399 |
gcatcacataaatttagtgtcnnnnnnnattataaatgttaacaaatttcaatggtattctacctatgt |
467 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21558716 |
gcatcacataaatctagtgtcttttttaattataaatgttaacaaatttcaatggtattctacctatgt |
21558648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 41003657 - 41003552
Alignment:
| Q |
62 |
atgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcac |
161 |
Q |
| |
|
|||| ||| |||||||| || |||||| ||||||| |||| |||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41003657 |
atggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagctatgccaacaattcccaagcac |
41003558 |
T |
|
| Q |
162 |
aggtac |
167 |
Q |
| |
|
|||||| |
|
|
| T |
41003557 |
aggtac |
41003552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University