View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_6 (Length: 440)
Name: NF16264_low_6
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 362
Target Start/End: Complemental strand, 330867 - 330523
Alignment:
| Q |
21 |
caagggtatccaccacaaggatatccgccaccgggatatccaccaccaggttatccaccgcaacaaggatatcctccaccaccctacccagcacaagggt |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330867 |
caagggtatccaccgcaaggatatccgccaccgggatatccaccaccaggttatccaccgcaacaaggatatcctccaccaccctacccagcacaagggt |
330768 |
T |
|
| Q |
121 |
atcctccacaatatgctcctcctcaatacgctcaacctccacctcctcaacatgtacacaatcacaacaattcaagcggccctggttgtttagaaggatg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330767 |
atcctccacaatatgctcctcctcaatacgctcaacctccacctcctcaacatgtacacaatcacaacaattcaagcggccctggttgtttagaaggatg |
330668 |
T |
|
| Q |
221 |
gtacgtacgttaattacataattccctctctcatgcatgcatccatgcattcctttcattcttaatctcttttgtctg---ctgccaaattggatctgct |
317 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
330667 |
gtacgttcgttaattatataattccctctctcatgcatgcatccatgcattcctttcattcttaatctcttgtgtctgcttctgccaaatcagatctgct |
330568 |
T |
|
| Q |
318 |
tcatttacaacttgattatttttacaatatcaaatttatacatta |
362 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
330567 |
tcatttacgacttgattatttttacaatgtcaaatttatacatta |
330523 |
T |
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