View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16264_low_7 (Length: 419)
Name: NF16264_low_7
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_7 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 276384 - 276786
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276384 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
276483 |
T |
|
| Q |
101 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276484 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatatg |
276583 |
T |
|
| Q |
201 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276584 |
catgcatcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtt |
276683 |
T |
|
| Q |
301 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
276684 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccacccattgccttaagccatgt |
276783 |
T |
|
| Q |
401 |
ttt |
403 |
Q |
| |
|
||| |
|
|
| T |
276784 |
ttt |
276786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 26396989 - 26397391
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396989 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
26397088 |
T |
|
| Q |
101 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397089 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatatg |
26397188 |
T |
|
| Q |
201 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397189 |
catgcatcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtt |
26397288 |
T |
|
| Q |
301 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26397289 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccacccattgccttaagccatgt |
26397388 |
T |
|
| Q |
401 |
ttt |
403 |
Q |
| |
|
||| |
|
|
| T |
26397389 |
ttt |
26397391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 388
Target Start/End: Original strand, 25829782 - 25829933
Alignment:
| Q |
237 |
cttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaatacctcttcaatagccactttca |
336 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||| || ||||| || |||||||| |||| ||| |||||||||| |
|
|
| T |
25829782 |
cttattacatgaccaagcttctcatgaacctttcttagtatatgccaaagacaaaatcggtgtcgagtgtttggaaacacctaactaatcgccactttca |
25829881 |
T |
|
| Q |
337 |
ttgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgc |
388 |
Q |
| |
|
||||||| ||||| | |||||| |||||| ||||||||||||| | |||||| |
|
|
| T |
25829882 |
ttgctctatcttgataagttattattgcagttggaggtttcccgcccattgc |
25829933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 376
Target Start/End: Original strand, 19219724 - 19219868
Alignment:
| Q |
232 |
tatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaatacctcttcaatagccac |
331 |
Q |
| |
|
||||||||| |||||||| || ||||||| | || |||||||||||||||||||||||||| | ||| | || |||||||||| |||| |||| ||| |
|
|
| T |
19219724 |
tatttcttaatacatgacaaaacttctcaagaacatttctaagtatatgccaaagacaaaatcagtgttgagtgtttggaaatatctctctgatagtcac |
19219823 |
T |
|
| Q |
332 |
tttcattgctctgtcttggtcagttatcattgcatttggaggttt |
376 |
Q |
| |
|
||| |||||||| ||||| ||| ||| |||||| |||||||||| |
|
|
| T |
19219824 |
ttttattgctctatcttgatcacatattattgcaattggaggttt |
19219868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 19217538 - 19217623
Alignment:
| Q |
234 |
tttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaatacctc |
319 |
Q |
| |
|
||||||| |||||||| || ||||||| | || ||||||||||||| ||||||| |||| | |||||| || |||||||||||||| |
|
|
| T |
19217538 |
tttcttaatacatgactaaacttctcaagaacatttctaagtatataccaaagataaaatcaatgtcgagtgtttggaaatacctc |
19217623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 29274 - 29676
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29274 |
aaaaagagttgatgctctctaatctttgagttgttgacatgccagcgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
29373 |
T |
|
| Q |
101 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29374 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatatg |
29473 |
T |
|
| Q |
201 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29474 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
29573 |
T |
|
| Q |
301 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29574 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtaagttatcattggatttggaggtttcccacatattgccttaagccatgt |
29673 |
T |
|
| Q |
401 |
ttt |
403 |
Q |
| |
|
||| |
|
|
| T |
29674 |
ttt |
29676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 20645730 - 20646125
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
20645730 |
aaaaggagttgatgctctctgatctttgagttgttgacataccaccaaaaaatgtatctttcatgtaaacaggaattcaatgttcacgttcttcatataa |
20645829 |
T |
|
| Q |
101 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatata |
200 |
Q |
| |
|
||||||||||| ||||||| || || |||||||| |||||||||||| | || ||| ||| ||||||||||||||| | |||||||| || |
|
|
| T |
20645830 |
cgactgaatccatacatcctcagac------agctgaaatttttctaccatttcttctcatttatcttgaaactgttgtattgaacgggacttgtaaatg |
20645923 |
T |
|
| Q |
201 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
300 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| | ||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20645924 |
catgagttaaaatatcccatgaaatcatcattttcacttataacatgaccgagtttttcaggcacttttctaagtatatgccaaagacaaaaacgatgtc |
20646023 |
T |
|
| Q |
301 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgt |
400 |
Q |
| |
|
| | |||||| ||||| | | ||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | ||||||| || |
|
|
| T |
20646024 |
gagcatttgg-aatacatttgcaataactactttcattgctctgtcttggtcagttattattgcatttggaggcttcccacccattgtcctaagccaagt |
20646122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 56109050 - 56108654
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56109050 |
aaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaacaggaacccaatgttcacgttcttcatataa |
56108951 |
T |
|
| Q |
101 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatata |
200 |
Q |
| |
|
||| |||||||| |||| || | |||| | |||||| || |||||||| ||| ||| ||||||| |||||| ||||| |||||| ||||| |
|
|
| T |
56108950 |
agagtgaatccaatcatc-tccaa-----atagatcaaatttttccaccatttcatgccatttatcttcaaattgttgttttgaccaagacttatatatg |
56108857 |
T |
|
| Q |
201 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
300 |
Q |
| |
|
||| || | ||||| |||||| ||||| | || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
56108856 |
catatgttgagatatctcatgaagtcttcgtcatctcttaaaacatgactaagcttctcaggcacctttctaagtatatgccaaagacaaaatcgatgtc |
56108757 |
T |
|
| Q |
301 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgt |
400 |
Q |
| |
|
| | ||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||||||| | |
|
|
| T |
56108756 |
gagaatttggaaatacctctttaatagcctctttcattgctctatcttgatcagttatgattgcatttggaggttttccacccattgctctaagccatat |
56108657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 26014817 - 26014421
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataa |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26014817 |
aaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaacaggaacccaatgttcacgttcttcatataa |
26014718 |
T |
|
| Q |
101 |
agactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatata |
200 |
Q |
| |
|
||| ||||| || |||| || | |||| | |||||| || |||||||| ||| ||| ||||||| |||||| ||||| |||||| ||||| |
|
|
| T |
26014717 |
agagtgaattcaatcatc-tccaa-----atagatcaaatttttccaccatttcatgccatttatcttcaaattgttgttttgaccaagacttatatatg |
26014624 |
T |
|
| Q |
201 |
catgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtc |
300 |
Q |
| |
|
||| || | ||||| |||||| ||||| | || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26014623 |
catatgttgagatatctcatgaagtcttcgtcatctcttaaaacatgactaagcttctcaggcacctttctaagtatatgccaaagacaaaatcgatgtc |
26014524 |
T |
|
| Q |
301 |
gggtatttggaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgt |
400 |
Q |
| |
|
| | ||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||||||| | |
|
|
| T |
26014523 |
gagaatttggaaatacctctttaatagcctatttcattgctctatcttgatcagttatgattgcatttggaggttttccacccattgctctaagccatat |
26014424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 166 - 403
Target Start/End: Complemental strand, 6966166 - 6965926
Alignment:
| Q |
166 |
cttcaaactgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcac |
265 |
Q |
| |
|
||||||| |||||| ||||| |||||| ||||| ||| || | ||||| |||||| ||||| | || ||||| ||||||| ||||||||||||||| |
|
|
| T |
6966166 |
cttcaaattgttgttttgaccaagacttatatatgcatatgttgagatatctcatgaagtcttcgtcatctcttaaaacatgactaagcttctcaggcac |
6966067 |
T |
|
| Q |
266 |
ctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaa---tacctcttcaatagccactttcattgctctgtcttggtcagttatcatt |
362 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||| ||||||| ||||||||||||| ||||| |||||||| ||| |
|
|
| T |
6966066 |
ctctctaagtatatgccaaagacaaaatcgatgtcaagaatttggaaatactacctctttaatagcctctttcattgctctatcttgatcagttatgatt |
6965967 |
T |
|
| Q |
363 |
gcatttggaggtttcccactcattgccttaagccatgtttt |
403 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||| |||| |
|
|
| T |
6965966 |
gcatttggaggttttccacccattgctctaagccatatttt |
6965926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 6967483 - 6967394
Alignment:
| Q |
1 |
aaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgtt |
90 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
6967483 |
aaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaataggaacccaatgttcacgtt |
6967394 |
T |
|
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