View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16264_low_9 (Length: 384)
Name: NF16264_low_9
Description: NF16264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16264_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 137 - 357
Target Start/End: Complemental strand, 11404524 - 11404305
Alignment:
| Q |
137 |
cttcatataaatcatgcagagaaacaaatagaacatgatcaaaatgttctacagaaacacgttgcattcttcgacaggaatcatgatggcatcgtctacc |
236 |
Q |
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| T |
11404524 |
cttcatataaatcatgcagagaaacaaatagaacatgatcaaaatgttctacagaaacacgttgcattcttcgacaggaatcatgatggcatcgtctacc |
11404425 |
T |
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| Q |
237 |
catgggaaacatttcaaggtannnnnnnnnnnnnaaaattcttctcattgtatgctataattaacttctcatccat-nnnnnnnnnnnttccatctgaac |
335 |
Q |
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| T |
11404424 |
catgggaaacatttcaaggtaattttttttttt--aaattcttctcattgtatgctaaaattaacttctcatccataaaaataaaaaattccatctgaac |
11404327 |
T |
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| Q |
336 |
cgttttcttctcatttaaactg |
357 |
Q |
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| T |
11404326 |
cgttttcttctcatttaaactg |
11404305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 11404645 - 11404590
Alignment:
| Q |
17 |
atggcaaactcatcttctaccacaaacaacaacggaggtatctgaaaatcttaacc |
72 |
Q |
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| T |
11404645 |
atggcaacctcatcttctaccacaaacaacaacggaggtatctgaaaatcttaacc |
11404590 |
T |
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