View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_1 (Length: 751)
Name: NF16265_high_1
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 722
Target Start/End: Original strand, 55336740 - 55337457
Alignment:
| Q |
1 |
agagccaacagttgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggt |
100 |
Q |
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| T |
55336740 |
agagccaacagttgtgcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggt |
55336839 |
T |
|
| Q |
101 |
tgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgcacggtgttggagttatt |
200 |
Q |
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| T |
55336840 |
tgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgcacggtgttggagttatt |
55336939 |
T |
|
| Q |
201 |
gattgtagaattggataaatcatggtgtaaattatgtgtcctattgatgacannnnnnncaagcaataatgaaggaactgagtctttgaaggttaaccct |
300 |
Q |
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| T |
55336940 |
gattgaagaattggataaatcatggtgtaaattatgtgtcctattgatgacatttttttcaagcaataatgaaggaactgagtctttgaaggttaaccct |
55337039 |
T |
|
| Q |
301 |
tcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacatttcctctttttgaagacaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55337040 |
tcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacattacctctttttgaagacaaga |
55337139 |
T |
|
| Q |
401 |
aagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgctttgtgtttagtgttagtgaggaa |
500 |
Q |
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| T |
55337140 |
aagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgatttgtgtttagtgttagtgaggaa |
55337239 |
T |
|
| Q |
501 |
aggtttatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttaagac-aagagttatgggaggt |
599 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
55337240 |
aggtttatata-----tatactattgtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttagtacaaagagttatgggaggt |
55337334 |
T |
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| Q |
600 |
attaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaa |
699 |
Q |
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| T |
55337335 |
attaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaa |
55337434 |
T |
|
| Q |
700 |
tgagttcatgtcatgtgaaatta |
722 |
Q |
| |
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| T |
55337435 |
tgagttcatgtcatgtgaaatta |
55337457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 55331325 - 55331485
Alignment:
| Q |
24 |
agcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcg |
123 |
Q |
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||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || ||||||| | |
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| T |
55331325 |
agcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgttccaattctgtcgctgttgg |
55331424 |
T |
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| Q |
124 |
cagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgca |
184 |
Q |
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| || ||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||| |
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| T |
55331425 |
ctgaggttgttgtgcatttcgattctgtcggatacagaatctaaaattgcatagagttgca |
55331485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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