View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_10 (Length: 423)
Name: NF16265_high_10
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 15943515 - 15943123
Alignment:
| Q |
15 |
caccaccaaaaaccaaaatgacaaagggtccggctggcacaagagcaagacaacgaggctgaaactacaccgccaaaccacctccccaagaaacatgcaa |
114 |
Q |
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| T |
15943515 |
caccaccaaaaaccaaaacgacaaagggtccggctggcacaagagcaagacaacgaggctgaaactacaccgccaaaccacctccccaagaaacatgcaa |
15943416 |
T |
|
| Q |
115 |
caacaaaatcacagatcaagaggaaaaagtggaaacattacccagatcaaaacttatgtaatgtaatggtagcaggggtgatggttttggccttttaatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15943415 |
caacaaaatcacagatcaagaggaaaaagtggaaacattacccagatcaaaacttatgtaatgtaatggtagcaggggtgatggttttggccttttaatt |
15943316 |
T |
|
| Q |
215 |
gtttgaaattttgtacacttgttataggtattacaggagtggaagcattgtttcttcatataatgtattctttaatatgacatgtataaatattatcact |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15943315 |
gtttgaaattttgtacacttgttataggtattacaggagtggaagcattgtttcttcatataatgtattctttaatatgacatatataaatattatcact |
15943216 |
T |
|
| Q |
315 |
tggaatgctacatcatgtacatggtaactgtaaactagctctactagtttttcgagacatggattctactctgaaatggtacagataagtttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15943215 |
tggaatgctacatcatgtacatggtaactgtaaactagctctactagtttttcgagacatggattctactctgaaatggtacagataagtttt |
15943123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 15527424 - 15527560
Alignment:
| Q |
271 |
catataatgtattctttaatatgacatgtataaatattatcacttggaatgctacatcatgtacatggtaactgtaaactagctctactagtttttcgag |
370 |
Q |
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| T |
15527424 |
catataatgtgttcttccatatgacatatagaaatattatcacttggaatgctacatcatgtacatggcaactgtaagcaagctctactagtgtttcaag |
15527523 |
T |
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| Q |
371 |
acatggattctactctgaaatggtacagataagtttt |
407 |
Q |
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| T |
15527524 |
acacggattatgctatgaaattgtccaaataagtttt |
15527560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 16396549 - 16396586
Alignment:
| Q |
200 |
tttggccttttaattgtttgaaattttgtacacttgtt |
237 |
Q |
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| T |
16396549 |
tttggccttttaattgtttcaaattttgtacatttgtt |
16396586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 50589929 - 50589970
Alignment:
| Q |
78 |
actacaccgccaaaccacctccccaagaaacatgcaacaaca |
119 |
Q |
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| T |
50589929 |
actacaccgccaaaccacctcaccaagaaacaggcatcaaca |
50589970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 22886010 - 22886074
Alignment:
| Q |
75 |
gaaactacaccgccaaaccacctccccaagaaacatgcaacaacaaaatcacagatcaagaggaa |
139 |
Q |
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| T |
22886010 |
gaaaccacgccgccaaaccacctcaccaagaaacaagcagcaacacagttacatatcaagaggaa |
22886074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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