View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_12 (Length: 411)
Name: NF16265_high_12
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 50542818 - 50543200
Alignment:
| Q |
19 |
gttatagcaagggattagacatgagcctaaagtaaccatgttaaccacaaccaaataatccatctcaaatatgaaatttatgatattcaactaacttgtc |
118 |
Q |
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| T |
50542818 |
gttatagcaagggattagacatgagcctaaagtaaccatgttaaccacaaccagattatcaatctcaaatatgaaatttatgatattcaactaacttgtc |
50542917 |
T |
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| Q |
119 |
ataactattccaatgtaaatggctcatagttccggtcacacattagagtatgagtcaaatctatcgtagaagccacaaatggaccaaccatgagaaccaa |
218 |
Q |
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| T |
50542918 |
ataactattccaatgtaaatggctcatagttccgctcacacattagagtatgagtcaaatctatcgtagaagccacaaatggaccaaccatgagaaccaa |
50543017 |
T |
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| Q |
219 |
ctaagcaatcctccacaaatagaaatctcttatgactatgtatgagacctgagtagagtagatggaaatattacctgtagaacaaattccatcagttagc |
318 |
Q |
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| T |
50543018 |
ctaagcaatcctccacaaatagaaatctcttatgactatgtatgagacccgagtagagtagatggaaatattacctgtagaacaaattccatcagttagc |
50543117 |
T |
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| Q |
319 |
aaataattgtttccccaataaacatatccacaaaatgcaacccagtctatcaagcaatgaaaagatagttctagttgcctttg |
401 |
Q |
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| T |
50543118 |
aaataactgtttccccaataaacatatccacaaaatgcaacccagtctatcaagcaataaaaaggtagttctagttgcctttg |
50543200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 50557026 - 50557121
Alignment:
| Q |
269 |
gagtagagtagatggaaatattacctgtagaacaaattccatcagttagcaaataattgtttccccaataaacatatccacaaaatgcaacccagt |
364 |
Q |
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| T |
50557026 |
gagtagagtagatggaaatattacctgtagaacaaattccatcagttagcaaataactatttccccaataaacatatccacaaaatacaacccagt |
50557121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 29768311 - 29768353
Alignment:
| Q |
270 |
agtagagtagatggaaatattacctgtagaacaaattccatca |
312 |
Q |
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| T |
29768311 |
agtagagtagatggaaacattacctgaagaataaattccatca |
29768353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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