View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_2 (Length: 634)
Name: NF16265_high_2
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 16784257 - 16783645
Alignment:
| Q |
1 |
aaattgggaagagaaatggttggaagatgtggaggtttacctctagccataattgtccttggaggactactagcatcaaagccaacattttatgaatggg |
100 |
Q |
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| T |
16784257 |
aaattgggaagagaaatggttggaagatgtggaggtttacctctagccataattgtccttggaggactactagcatcaaagccaacattttatgaatggg |
16784158 |
T |
|
| Q |
101 |
acacagtgagacagaacatcaattcatacctaagaaaagcaaaaggcaaagaacaacttctaggagtatctgaagtactagctttgagctattatgaatt |
200 |
Q |
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| T |
16784157 |
acacagtgagacagaacatcaattcatacctaagaaaagcaaaaggcaaagaacaacttctaggagtatctgaagtactagctttgagctattatgaatt |
16784058 |
T |
|
| Q |
201 |
gccttaccaattaaaaccatgtttcctacacttagcacattttcctgaaaacttagagatacaaaccaagaagcttataacaacatgggtggcagaaggt |
300 |
Q |
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| T |
16784057 |
gccttaccaattaaaaccatgtttcctacacttagcacattttcccgaaaacctagagatacaaaccaagaaactcataagaacatgggtggcagaaggt |
16783958 |
T |
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| Q |
301 |
atcatatcgtcggttcaaaatgccggagacggcgaggaagctctcgaggacgtggcacgacgttacttgactgaactcatcgaaaggtgtatgattcagg |
400 |
Q |
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|||||||| ||||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783957 |
atcatatcatcggttcaaaacgctggagatggtgaggaagctctcgaggacgtggcacaacgttacttgactgaactcatcgaaaggtgtatgattcagg |
16783858 |
T |
|
| Q |
401 |
tggttgaaaagagttcaacaggaaggattagaacagttcaaatgcataatctcatgagggacctatgtgtgtctaaggcatatgaagagaactttcttga |
500 |
Q |
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| T |
16783857 |
tggttgaaaagagttcaacaggaaggattagaacagttcaaatgcataatctcatgagggacctatgtgtgtctaaggcatatgaagagaactttcttga |
16783758 |
T |
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| Q |
501 |
cattattgatttgaggaatgcagatcaaactagtacctcaaaagcaagaccgattggtaaagttcgacggatcgcgttatatcttgatcaagatgttgat |
600 |
Q |
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| T |
16783757 |
aattattgattcgaggaatgcagatcaaactagtacctcaaaagcaagaccgattggtaaagttcgacggatcgtgttatatcttgatcaagatgttgat |
16783658 |
T |
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| Q |
601 |
agattcttcccta |
613 |
Q |
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| T |
16783657 |
agattcttcccta |
16783645 |
T |
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