View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_20 (Length: 364)
Name: NF16265_high_20
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 2551440 - 2551765
Alignment:
| Q |
15 |
atgaaatcaatgaataatgtatatcatgttacacatggaatttatttgcaaaaaacttgcatatgaagtaaccgtgtaaatgaaaataaaaatagattcc |
114 |
Q |
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| T |
2551440 |
atgaaatcaatgaataatgtatatcatgttacacatggaatttatttgcaaaaaacttgcatatgaagtaaccgtgtaaatgaaaataaaaatagattcc |
2551539 |
T |
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| Q |
115 |
ttatttgttaccttgcctttgcatttggaatacattgaaaaatattctannnnnnnnnnnnnnnnnntagaatatttttcaagagtataaagaaaagaaa |
214 |
Q |
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| T |
2551540 |
ttatttgttaccttgcctttgcatttggaatacattgaaaaatattct----------tatatatattagaatatttttcaagagtataaagaaaagaaa |
2551629 |
T |
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| Q |
215 |
gacaaa---aaatgcttgaattttgtgtttctctaaagaacaagcttcaatgcaaacccaacaaaaaacatgtttatgatccaaagacaattaagcacca |
311 |
Q |
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| T |
2551630 |
gacaaattaaaatgcttgaattttgtgtttctctaaagaacaagcttcaatgcaaacccaacaaaaaacatgtttatgatccaaagacaattaagcacca |
2551729 |
T |
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| Q |
312 |
aaaaggtaagaataatcagagaacaaagtcgggttt |
347 |
Q |
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| T |
2551730 |
aaaaggtaagaataatcagagaacaaagtcgggttt |
2551765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 2562572 - 2562663
Alignment:
| Q |
227 |
ttgaattttgtgtttctctaaagaacaagcttcaatgcaaacc-caacaaaaaacatgtttatgatccaaagacaattaagcaccaaaaaggt |
318 |
Q |
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| T |
2562572 |
ttgaaatttgtctttctttcaagaggaagcttcaatgcaaaccacaaccaaaa-caagttcatgatccaaagacatttaggcaccaaaaaggt |
2562663 |
T |
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