View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_28 (Length: 295)
Name: NF16265_high_28
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 1395398 - 1395669
Alignment:
| Q |
11 |
cacagatatatttgtaggtctagcaaaaataagtgaacacaaat-----gaaatgaaatgaaactatagctttttgatctagatatttctgaactctcat |
105 |
Q |
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| T |
1395398 |
cacagatatatttgtaggtctagcaaagataagtgaacacaaatgaaatgaaatgaaatgaaactatagctttttgatctagatatttctgaactctcat |
1395497 |
T |
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| Q |
106 |
tttgcaacttgcattttgagagtaatgatttgtaaaggcttaatgaatccaatccaaatagcataaaacaaaacaacttttcttgaaatctacgagaatc |
205 |
Q |
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| T |
1395498 |
tttgcaacttgcattttgagagtaatgatttgtaaaggcttaatgaatccaatccaaatagcataaaacaaaacaacttttcttgaaatctacgagaatc |
1395597 |
T |
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| Q |
206 |
ccaatactttgtctgaatctggtctatcgctgataaatattgtgtagtccattctgtttgtaactctgttta |
277 |
Q |
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| T |
1395598 |
ccaatactttgtctgaatctggtctatggctgataaatattgtgtagtccattctgtttgtaactctgttta |
1395669 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 10389127 - 10389223
Alignment:
| Q |
62 |
aatgaaactatagctttttgatctagatatttctgaactctcatttt-gcaacttgcattttgagagtaatgatttgtaaaggcttaatgaatccaa |
157 |
Q |
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| T |
10389127 |
aatgaaagtatagccttttgttatagatatttctttcctctcatttttgcaacttgcagtttgagagtaatgatttgtaagggcttaatgaatccaa |
10389223 |
T |
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