View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_3 (Length: 605)
Name: NF16265_high_3
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 8467709 - 8467380
Alignment:
| Q |
20 |
taggaaacaaaaaacttgacttaataatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatata |
119 |
Q |
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| T |
8467709 |
taggaaacaaaaaacttgacttaataatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatata |
8467610 |
T |
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| Q |
120 |
atatgagcctcttctaatgtaaacctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagcta |
219 |
Q |
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| T |
8467609 |
agatgagcctcttctaatgtaaacctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagcta |
8467510 |
T |
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| Q |
220 |
gggttttcatcaaacaagatggattatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaatt |
319 |
Q |
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| T |
8467509 |
gggttttcatcaaacaagatggattatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaatt |
8467410 |
T |
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| Q |
320 |
aagctctgacactgcacacaagcatactag |
349 |
Q |
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| T |
8467409 |
aagctctgacactgcacacaaccatactag |
8467380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 418 - 582
Target Start/End: Complemental strand, 8467315 - 8467151
Alignment:
| Q |
418 |
ctgtgatttagggcagaaagctggttgtgcttgatagctctcgtggtagttagagttaggcacaagctcatcagataagaaaatagtatatcaggaaggc |
517 |
Q |
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| T |
8467315 |
ctgtgattcagggcagaaagctggttgtgcttgatagctctcgtggtagttagagttaggcacaagttcatcagataagaaaatagtatatcaggaaggc |
8467216 |
T |
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| Q |
518 |
tttacaaagagaagctaacagtggtctgttggcagtatgcccacctcctacagcaaagctacagt |
582 |
Q |
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| T |
8467215 |
tttacaaagagaagctaacagtggtctgttggcagtatgcccacctcctacagcaaagctacagt |
8467151 |
T |
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