View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_30 (Length: 291)
Name: NF16265_high_30
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 9690873 - 9690669
Alignment:
| Q |
14 |
cagatgagtctagagttgattcttagacttgagtataagttctagggtttattttaggtaaaattaaatgatagagtattcatagatcgtaataaacaag |
113 |
Q |
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| T |
9690873 |
cagatgagtctaaagttgattcctagacttgagtataagttctagggtttattttaggtaaaattaaatgatatagtattcatagatcgtaataaacaag |
9690774 |
T |
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| Q |
114 |
agatcagtgtagagtttaattgtgagacaattatcctctaaagtagaggagcagtgtaattcagcagttacaatgt-aggtaggtgagtagggcggcact |
212 |
Q |
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| T |
9690773 |
agatcagtgtagagtttaattgtgaggcagttatcctctaaactagaggagcagtgtaattcaacaattacaatgtaaggtaggtgagtagggcggcact |
9690674 |
T |
|
| Q |
213 |
tacga |
217 |
Q |
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||||| |
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| T |
9690673 |
tacga |
9690669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 9689991 - 9689943
Alignment:
| Q |
223 |
tttatctaagaaacttccttcaaaaatgtttatctaagaaagtcaattg |
271 |
Q |
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| T |
9689991 |
tttatctaagaaacttccttcaaatatgtttatctaagaaagtaaattg |
9689943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 1945136 - 1945233
Alignment:
| Q |
90 |
tattcatagatcgtaataaacaagagatcagtgtagagtttaattgtgagacaattatcctctaaagtagaggagcagtgtaattcagcagttacaatgt |
189 |
Q |
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| T |
1945136 |
tattcatagttcataacaaacaagaaatcaatgtagagcttaattgggg--cagttatcctctaaagtagaggagcaatgtaattaagtagttacaatgt |
1945233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 1933899 - 1933979
Alignment:
| Q |
17 |
atgagtctagagttgattcttagacttgagtataagttctagggtttattttaggtaaaattaaatgatagagtattcatag |
98 |
Q |
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||||||||| | |||||||||| ||||||||||||| ||| ||||||||||| ||| |||| |||||||| | ||||||||| |
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| T |
1933899 |
atgagtctaaaattgattcttaaacttgagtataagctcttgggtttattttgggt-aaataaaatgatatattattcatag |
1933979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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