View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_high_31 (Length: 281)
Name: NF16265_high_31
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_high_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 36 - 281
Target Start/End: Complemental strand, 40811124 - 40810879
Alignment:
| Q |
36 |
caccttcatttgtaagagctgaaatcacacaacaatttcaactattaagccaaaagctacgccttccgtttattcaaaactaaaatgtaaacatgaaaaa |
135 |
Q |
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| T |
40811124 |
caccttcatttgtaagagctgaaatcacacaacaatttcaactattaagccaaaagctacgtcttgcgtttattcaaaactaaaatgtaaacatgaaaaa |
40811025 |
T |
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| Q |
136 |
gttactttgcacaaaaagcaactaccaggtgagcgtaacttcaaccaaagctttgaaacatgccctgttaatagctcagagagcaagaatgcaatggaat |
235 |
Q |
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| T |
40811024 |
gttactttgcacaaaaagcaactaccaggtgagcgtaacttcaaccaaagctttgaaacatgccctgttaatagctcagagagcaagaatgcaatggaat |
40810925 |
T |
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| Q |
236 |
gtaaggaataacagcaccagaaatgtcaaagaaacatacattattg |
281 |
Q |
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| T |
40810924 |
gtaaggaataacagcaccagaaatgtcaaagaaacatacattattg |
40810879 |
T |
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