View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16265_high_34 (Length: 253)

Name: NF16265_high_34
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16265_high_34
NF16265_high_34
[»] chr4 (7 HSPs)
chr4 (1-253)||(6770060-6770304)
chr4 (2-68)||(6812409-6812475)
chr4 (2-68)||(6626250-6626316)
chr4 (4-66)||(6522057-6522119)
chr4 (2-48)||(6501776-6501822)
chr4 (152-206)||(6549644-6549698)
chr4 (1-67)||(6832917-6832983)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 6770060 - 6770304
Alignment:
Q  1 ttgctacaagccatggcaagggatatcattaagaggcaatcaagtaatttgcctgatcaggtgagtggtcannnnnnnnnnnnntcacaaagaaagccaa 100  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||    
T  6770060 ttgctacaagccatggcaaggtatatcactaagaggcaatcaagtaatttgcctgatcaggtgagtggtcatgtgtgtgtgt--tcacaaagaaagccaa 6770157  T
Q  101 ctaaacaataatgaaatcagtttgatgacgtttggtttgataatcatcatgataacataggaagttaattagtatgactatgaattaaaaattaattaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  6770158 ctaaacaataatgaaatcagtttgatgacgtttggtttgataatcatcatgataacataggaagtatattagtatgactatgaattaaaaattaattaca 6770257  T
Q  201 ataaattgtaggtaatattaataacctcatagttaatgatgtatcaggggcat 253  Q
    ||||||||||||      |||||||||||||||||||||||||| ||||||||    
T  6770258 ataaattgtagg------taataacctcatagttaatgatgtataaggggcat 6770304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 6812409 - 6812475
Alignment:
Q  2 tgctacaagccatggcaagggatatcattaagaggcaatcaagtaatttgcctgatcaggtgagtgg 68  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| || || |||||||||||||    
T  6812409 tgctacaagccatggcaagagatatcattaagagggaatcaagtaatatgtctaatcaggtgagtgg 6812475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 6626316 - 6626250
Alignment:
Q  2 tgctacaagccatggcaagggatatcattaagaggcaatcaagtaatttgcctgatcaggtgagtgg 68  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||  | ||||||||||||||||    
T  6626316 tgctacaagcgatggcaagggatatcattaagagagaatcaagtaataagactgatcaggtgagtgg 6626250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 6522119 - 6522057
Alignment:
Q  4 ctacaagccatggcaagggatatcattaagaggcaatcaagtaatttgcctgatcaggtgagt 66  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  | || |||||||||||    
T  6522119 ctacaagccatggcaagagatatcattacgagggaatcaagtaataagactaatcaggtgagt 6522057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 6501822 - 6501776
Alignment:
Q  2 tgctacaagccatggcaagggatatcattaagaggcaatcaagtaat 48  Q
    ||||||||||||||||||| ||||||||||| ||  |||||||||||    
T  6501822 tgctacaagccatggcaagagatatcattaacagagaatcaagtaat 6501776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 6549698 - 6549644
Alignment:
Q  152 ataacataggaagttaattagtatgactatgaattaaaaattaattacaataaat 206  Q
    |||||||  |||||||||||||||||||||| ||| ||||||| | |||||||||    
T  6549698 ataacatcagaagttaattagtatgactatggattgaaaattattaacaataaat 6549644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6832917 - 6832983
Alignment:
Q  1 ttgctacaagccatggcaagggatatcattaagaggcaatcaagtaatttgcctgatcaggtgagtg 67  Q
    ||||||||| |||||||||| ||| |||||| |||| |||||||||||  | | |||||||||||||    
T  6832917 ttgctacaatccatggcaagagatgtcattaggaggaaatcaagtaataagaccgatcaggtgagtg 6832983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University