View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16265_low_11 (Length: 424)
Name: NF16265_low_11
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 37619490 - 37619883
Alignment:
| Q |
18 |
cgaatgaactatcttgaaatttaaagtgcaaagaatgtaaaaaatacattgaaaatgtacggtgcataaagtaaaataaatgaaggtcaactggcataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37619490 |
cgaatgaactatcttgaaatttaaagtgcaaagaatctaaaaaatacattgaaaatgtacagtgcataaagtaaaataaatgaaggtcaactggcataaa |
37619589 |
T |
|
| Q |
118 |
cttgaagtgcaagaaatgtaaatgagtttaaaaagtaaattgctatgttgttaaaagtgcacaaatgtaaaagactttgaaaattaattgcagaaactta |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37619590 |
cttgaagtgcaagaaatataaatgagtttaaaaagtaaattgctatgttgttaaaagtgcacaaatgtaaaagactttgaaaattaattgcagaaactta |
37619689 |
T |
|
| Q |
218 |
taagtacataaatataaatgaaaatcatgtaaatcaaactaagagtaaagcgtgttaaattaaatttgacnnnnnnntaaatgatctacgtaattaaata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
37619690 |
taagtacataaatataaatgaaaatcatgtaaatcaaactaagagtaaaccgtgttaaattaaatttgacaaaaaaataaatgacctacgtaatcaaata |
37619789 |
T |
|
| Q |
318 |
ccaaaaatatacgatcatttagagttgtatgtgatttttgaaatgcattaagcaactctcgttacaaagtcttcaaaccttatagagaattatc |
411 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37619790 |
ccaaaaatagacgatcatttagagttttatgtgatttttgaaatgcattaagcaactctcgttacaaagtcttcaaaccttatagagaagtatc |
37619883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University