View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16265_low_15 (Length: 405)

Name: NF16265_low_15
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16265_low_15
NF16265_low_15
[»] chr3 (6 HSPs)
chr3 (57-174)||(15540139-15540255)
chr3 (85-175)||(15539318-15539408)
chr3 (86-188)||(47007730-47007832)
chr3 (85-169)||(47007026-47007110)
chr3 (116-169)||(4523181-4523234)
chr3 (19-62)||(15539830-15539874)
[»] chr8 (1 HSPs)
chr8 (324-396)||(9689718-9689790)
[»] chr6 (1 HSPs)
chr6 (85-174)||(4275070-4275159)
[»] chr2 (2 HSPs)
chr2 (116-174)||(29308385-29308443)
chr2 (116-173)||(29307853-29307910)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 15540139 - 15540255
Alignment:
Q  57 taaattgatttaagttgaaaaaatatgggccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaa 156  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  15540139 taaatttatttaagttgaaaaaatctgggccattgatttgctttttgccacgtgtcatctttttatga-tggaaattgtgattgccatttcttctctaaa 15540237  T
Q  157 tggagaggatctggactc 174  Q
    ||||||||||||||||||    
T  15540238 tggagaggatctggactc 15540255  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 15539408 - 15539318
Alignment:
Q  85 gccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactca 175  Q
    ||||||||||| ||| ||||||  ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15539408 gccattgatatacttcttgccacatgtcagcttattttaattggaaattgtgattgccatttcttctctaaatggagaggatctggactca 15539318  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 47007730 - 47007832
Alignment:
Q  86 ccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactcaacattcatat 185  Q
    ||||||||||   |||| ||| ||||||  |||| |||| ||||||||| |||||| ||||| || |||||||||||||||||| |||||   |||||||    
T  47007730 ccattgatattaattttcccacgtgtcatgttttaatgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcactcacacttcatat 47007829  T
Q  186 atg 188  Q
    |||    
T  47007830 atg 47007832  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 47007110 - 47007026
Alignment:
Q  85 gccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctg 169  Q
    |||||||||||   |||| ||| ||||||  |||| |||| ||||||||| |||||| ||||| || ||||||||||||||||||    
T  47007110 gccattgatattaatttttccacgtgtcatgttttaatgaatggaaattgagattgcaatttcctccctaaatggagaggatctg 47007026  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 4523234 - 4523181
Alignment:
Q  116 tttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctg 169  Q
    ||||||||||||||||||| ||||| |||||| ||   ||||||||||||||||    
T  4523234 tttttatgattggaaattgagattgtcatttcctcataaaatggagaggatctg 4523181  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 15539830 - 15539874
Alignment:
Q  19 agtggatctca-caatttttctgtttttaatattctaaataaatt 62  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||    
T  15539830 agtggatctcaacaagttttctgtttttgatattctaaataaatt 15539874  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 9689718 - 9689790
Alignment:
Q  324 agttaacctttgatcctgagtaaataatcatttacttatgcacaactttttatcttatttatcctaactattt 396  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9689718 agttaacatttgatccagagtaaataatcatttacttatgcacaactttttattttatttatcctaactattt 9689790  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 4275159 - 4275070
Alignment:
Q  85 gccattgatatgctttttgccatgtgtcagctttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactc 174  Q
    |||||||||||   |||| ||| ||||||  ||||||||| ||||||||| |||||||||||  |  |||||||||||||||||| ||||    
T  4275159 gccattgatatttatttttccacgtgtcatgtttttatgaatggaaattgagattgccattttctacctaaatggagaggatctgtactc 4275070  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 29308385 - 29308443
Alignment:
Q  116 tttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggactc 174  Q
    ||||||||| | ||||||| |||||| ||||| || |||||||||||||||||| ||||    
T  29308385 tttttatgaatagaaattgagattgcaatttcctccctaaatggagaggatctgcactc 29308443  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 29307910 - 29307853
Alignment:
Q  116 tttttatgattggaaattgtgattgccatttcttctctaaatggagaggatctggact 173  Q
    ||||||||| | |||||||  ||||| ||||| || ||||||||||||||||||||||    
T  29307910 tttttatgaatagaaattgacattgcaatttcctccctaaatggagaggatctggact 29307853  T

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