View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_16 (Length: 398)
Name: NF16265_low_16
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 34 - 386
Target Start/End: Original strand, 31636392 - 31636745
Alignment:
| Q |
34 |
tcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgttggaatattgatgatgaagatcattaaaagtatcacggagaaaaagagaaaagaag |
133 |
Q |
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| T |
31636392 |
tcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaagcatcacggagaaaaagagaaaagaag |
31636491 |
T |
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| Q |
134 |
atggatgaagaagaggtttcattcttgcagccgaagaaagaaagttagaataggtttagttggaaagaggaatagcactaaaagggatataaatcaatgt |
233 |
Q |
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| T |
31636492 |
atggatgaagaagaggtttcattcttgcagccgaagaaagaaagttagaataggtttagttggaaagaggaatagcactaaaagggatataaatcaatgt |
31636591 |
T |
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| Q |
234 |
ctgaaataaac-aaactacgcgtagttgattatactcaataataacttagtcgtgtttcactttcaatgggtggaaattttaaatttctatgagannnnn |
332 |
Q |
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| T |
31636592 |
ctgaaataaacaaaactacgcgtagtttattatattcaataataacttagtcgtgtttcactttcaatgggtggaaattttaaatttctatgagattttt |
31636691 |
T |
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| Q |
333 |
nngtttatttgttgatgtttctaggaagcttgagggtaacggcaaatgcagaat |
386 |
Q |
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| T |
31636692 |
ttgtttatttgttgatgtttctaggaagcttgagggtaacggcaaatgcagaat |
31636745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 31621397 - 31621469
Alignment:
| Q |
34 |
tcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgttggaatattgatgatgaagatcattaaaa |
106 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
31621397 |
tcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaa |
31621469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 31616686 - 31616718
Alignment:
| Q |
60 |
atcatcgcacatacacgttggaatattgatgat |
92 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
31616686 |
atcatcacacatacacgttggaatattgatgat |
31616718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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