View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_24 (Length: 357)
Name: NF16265_low_24
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 21272761 - 21272423
Alignment:
| Q |
1 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgtctcaaccggagttattagtagcgagactttttaaagcctggtatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21272761 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgtctcaaccggagttattagtagcgagactttttaaagcctggtatt |
21272662 |
T |
|
| Q |
101 |
atccgaggaatgatatttttgaagcaaagaaaggacacaattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacaca |
200 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21272661 |
atccgaggaattatatttttgaagcaaagaaaggacacaattccagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacaca |
21272562 |
T |
|
| Q |
201 |
gtggacaattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgct |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21272561 |
gtggacgattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacagcagtttagcacagcctgttttgcaatgcaatcagctgct |
21272462 |
T |
|
| Q |
300 |
gcaacttaatacgaaggaactgcttcagcctggacagaa |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
21272461 |
gcaacttaatacgaaggaactgcttcagcctgggcagaa |
21272423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 22009911 - 22009579
Alignment:
| Q |
1 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgtctcaaccggagttattagtagcgagactttttaaa-gcctggtat |
99 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||| |
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| T |
22009911 |
aatttatatttgttcaatatggcacttcttggcaatcaagtctggcggttaatgtctcaaccggagttattagtagcaagactttttaaaagcacggtat |
22009812 |
T |
|
| Q |
100 |
tatccgaggaatgatatttttgaagcaaagaaaggacacaattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacac |
199 |
Q |
| |
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|||| ||||||| ||||||||| ||||| |||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
22009811 |
tatcgaaggaatgctatttttgaggcaaataaaggaaacaatttaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaa |
22009712 |
T |
|
| Q |
200 |
agtggacaattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgc |
298 |
Q |
| |
|
||||| || ||||| ||||||||||| |||| |||||||||||||||||||||| ||| || ||||||||||||||| | | | | ||||| | ||| |
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| T |
22009711 |
ggtggaagatcggtaacggagataaaattcggg-tttttcaagataggtggctcgtgaacggcggtttagcacagcctgctgcgtagtacaatcggttgc |
22009613 |
T |
|
| Q |
299 |
tgcaacttaatacgaaggaactgcttcagcctgg |
332 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| |
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|
| T |
22009612 |
tgcaacttaatgtgaaggaattgcttcagcctgg |
22009579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 6751755 - 6751424
Alignment:
| Q |
1 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgtctcaaccggagttattagtagcgagactttttaaagcctggtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||| | |||| |
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| T |
6751755 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggcggttaatgtgtcaaccggagttattaatagcaagactttttaaagcacgatatt |
6751656 |
T |
|
| Q |
101 |
atccgaggaatgatatttttgaagcaaagaaaggacacaattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacaca |
200 |
Q |
| |
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| | ||||||||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
6751655 |
accaaaggaatgatatttttgaggcaaagaaaggaaataattcaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaag |
6751556 |
T |
|
| Q |
201 |
gtggacaattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgct |
299 |
Q |
| |
|
||||| |||||||| ||||||||| || | |||||||||||||||||||| | || || ||||||||||||||| | ||| | ||||||| |||| |
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|
| T |
6751555 |
gtggaagattggtaagaaagataaaattcgag-tttttcaagataggtggctcatgaatggcggtttagcacagcctgctgcgcagtacaatcagttgct |
6751457 |
T |
|
| Q |
300 |
gcaacttaatacgaaggaactgcttcagcctgg |
332 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||| |
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| T |
6751456 |
gcaacttaatgtgaaggaattgcttcaacctgg |
6751424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 6466771 - 6467094
Alignment:
| Q |
1 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgtctcaaccggagttattagtagcgagactttttaaagcctggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| ||| ||||||||| ||||||||||||| ||||||| |||||||||||||| |||||| |
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|
| T |
6466771 |
aatttatatatgttcaatatggcacttcatgacaagcaagtctggcggttaatgtgtcaaccggagttactagtagcaagactttttaaagcacggtatt |
6466870 |
T |
|
| Q |
101 |
atccgaggaatgatatttttgaagcaaagaaaggacacaattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacaca |
200 |
Q |
| |
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| | ||||||||||||||||| || ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
6466871 |
accgaaggaatgatatttttgaggc-aagaaaggaaataattcaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaag |
6466969 |
T |
|
| Q |
201 |
gtggacaattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacagcagtttagcacagcctg-tttgcaatgcaatcagctgct |
299 |
Q |
| |
|
||||| |||||||| ||||||||||| | | |||||||||||||||||||| | || || |||||||| |||||| | ||| | ||||||| |||| |
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| T |
6466970 |
gtggaagattggtaagggagataaaatttgag-tttttcaagataggtggctcatgaatggcggtttagcagagcctgctgcgcagtacaatcagttgct |
6467068 |
T |
|
| Q |
300 |
gcaacttaatacgaaggaactgcttc |
325 |
Q |
| |
|
||||||||| ||||||| |||||| |
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| T |
6467069 |
acaacttaatgtgaaggaattgcttc |
6467094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 6956478 - 6956150
Alignment:
| Q |
1 |
aatttatatatgttcaatatggcacttcttggcaagcaagtttggtggttaatgtctcaaccggagttattagtagcgagactttttaaagcctggtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||| |||||||||||||| |||||||||||||| | ||| |
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| T |
6956478 |
aatttatatatgttcaatatggcacttctaggcaaacaagtatgtcggttaatgtctcaaccagagttattagtagcaagactttttaaagcacgacatt |
6956379 |
T |
|
| Q |
101 |
atccgaggaatgatatttttgaagcaaagaaaggacacaattcgagttatgtgtggaagagtattcacgaggctatacccatggttaagcaaggaacaca |
200 |
Q |
| |
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| | ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
6956378 |
accgaaggaatgatatttttgaggcaaagaaaggaaacaattcaagttatgtgtggaagagtattcatgaggctatacccatggtcaagcaaggaacaag |
6956279 |
T |
|
| Q |
201 |
gtggacaattggtaatggagataaaatccgggatttttcaagataggtggctcgtaaacagcagtttagcacagcct-gtttgcaatgcaatcagctgct |
299 |
Q |
| |
|
||||| |||||||| |||||||||| |||| |||||||||||||||||||| | || ||||||||||||||||| | ||| | ||||||| |||| |
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|
| T |
6956278 |
gtggaagattggtaacagagataaaattcggg-tttttcaagataggtggctcatgaatggcagtttagcacagcctactgcgcagtacaatcagttgct |
6956180 |
T |
|
| Q |
300 |
gcaacttaatacgaaggaactgcttcagcc |
329 |
Q |
| |
|
|||||||||| ||| ||| |||||||||| |
|
|
| T |
6956179 |
gcaacttaatgtgaacgaattgcttcagcc |
6956150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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