View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16265_low_25 (Length: 355)
Name: NF16265_low_25
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_25 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 129 - 355
Target Start/End: Original strand, 41845014 - 41845241
Alignment:
| Q |
129 |
ctcataaatctccatcatacaattgcaatgattaaattgacttatnnnnnnnn-ggacatatatgattgaaaaaattcaaaagactaatttgaaagagtg |
227 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41845014 |
ctcataaatctccatcatacaatttcaatgattaaattgacttataaaaaaaaaggacatatatgattgaaaaaattcaaaagactaatttgaaagagtg |
41845113 |
T |
|
| Q |
228 |
gtgatatttatcgcgacaaaaaatgtcccaaaattatcttatgtttcattccattgaatcttccgcattgtagacggtatgatataaaaagatggaccat |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41845114 |
gtgatatttatcgcgacaaaaaatgtcccaaaattatcttgtgtttcattccattgaatcttccgcattgtagacggtatgatataaagagatggaccat |
41845213 |
T |
|
| Q |
328 |
gacatttgttaaaatagcgtcgtggttt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41845214 |
gacatttgttaaaatagcgtcgtggttt |
41845241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 41844911 - 41844954
Alignment:
| Q |
24 |
ttcatggatcatcaatttagtgtctaaaattatagatcacagtc |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41844911 |
ttcatggatcatcaatttagtgtctaaaattatagatcacagtc |
41844954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University