View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16265_low_27 (Length: 334)
Name: NF16265_low_27
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 5593151 - 5593465
Alignment:
| Q |
1 |
aaacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593151 |
aaacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgg |
5593250 |
T |
|
| Q |
101 |
gaagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593251 |
gaagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaaga |
5593350 |
T |
|
| Q |
201 |
caaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaattggaaacaccaaccatggctttatcatagattccatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
5593351 |
caaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaataggaaacaccaaccatggctttatcatagattccatct |
5593450 |
T |
|
| Q |
301 |
ctaagaagaaaatat |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
5593451 |
ctaagaagaaaatat |
5593465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 5586918 - 5587219
Alignment:
| Q |
1 |
aaacacttcatgtttcataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
5586918 |
aaacacttcatgtttcataatatggttaagttaaaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcgg |
5587017 |
T |
|
| Q |
101 |
gaagtcgatcccgtaaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaaga |
200 |
Q |
| |
|
|||||||| || || ||||||||||| ||| ||| |||| | ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||| |
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| T |
5587018 |
aaagtcgattccatagggattgtaattagattttgcagag---gtaggaaggttattgttgtttccactatcagataaagagtctccaaagataaataga |
5587114 |
T |
|
| Q |
201 |
caaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaattggaaacaccaaccatggctttatcatagattccatat |
300 |
Q |
| |
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||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||| || ||| ||| ||||||||| ||| || ||| ||||||||| |
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| T |
5587115 |
caaggcacttgggatttcccattgacacattgttgcaaatagtttgcagaaaagaaaacaataagaactaccaaccatttcttgattataaattccatat |
5587214 |
T |
|
| Q |
301 |
ctaag |
305 |
Q |
| |
|
|||| |
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|
| T |
5587215 |
ttaag |
5587219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 5573414 - 5573694
Alignment:
| Q |
28 |
aagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcgatcccgtaaggattgtaatt |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||| |
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|
| T |
5573414 |
aagttgaaagaatgttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaatt |
5573513 |
T |
|
| Q |
128 |
tgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttgggatttcccattgaca |
227 |
Q |
| |
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||| ||| |||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||| |
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|
| T |
5573514 |
agattttgcagaggtag---gaaggttattgttgtttccactatcagataaagaatctccaaagataaatacacaaggcacttgagatttcccattgaca |
5573610 |
T |
|
| Q |
228 |
gattgctgcaaatagtttgcagacaagagaagaattggaaacaccaaccatggctttatcatagattccatatctaagaagaaa |
311 |
Q |
| |
|
|||| | ||||||||||||||||||| || ||| ||| ||||||||||| || || ||||||||||| |||||||||||| |
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|
| T |
5573611 |
cattgtttaaaatagtttgcagacaagaaaacaataagaaccaccaaccatgttttgattatagattccatctctaagaagaaa |
5573694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 5576562 - 5576824
Alignment:
| Q |
15 |
tcataatatggataagttaaaag-aatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcgatcccg |
113 |
Q |
| |
|
||||||||| |||||||| || | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
5576562 |
tcataatatagataagttgaacggaatgctacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattcca |
5576661 |
T |
|
| Q |
114 |
taaggattgtaatttgatcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg |
213 |
Q |
| |
|
||||| |||||||| ||| ||| |||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
5576662 |
taaggtttgtaattagattttgcagag---gtgggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg |
5576758 |
T |
|
| Q |
214 |
atttcccattgacagattgctgcaaatagtttgcagacaagagaagaattggaaacaccaaccatg |
279 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||| |||| |||||| ||| || |||||||| |
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|
| T |
5576759 |
attttccattgacaaattgttgcaaatagtttgcagaaaagataagaataagaaccatcaaccatg |
5576824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 177 - 313
Target Start/End: Original strand, 5582835 - 5582971
Alignment:
| Q |
177 |
aaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaattggaaacaccaacc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5582835 |
aaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagagaagaataggaaacaccaacc |
5582934 |
T |
|
| Q |
277 |
atggctttatcatagattccatatctaagaagaaaat |
313 |
Q |
| |
|
||| |||||| ||||| ||||| |||||||||||||| |
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|
| T |
5582935 |
atgtctttattatagaatccatctctaagaagaaaat |
5582971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 12064775 - 12064683
Alignment:
| Q |
34 |
aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcgatcccgtaaggattgtaat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||| || || ||||| ||||||| |
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|
| T |
12064775 |
aaagaatgttacttattatgtcaattgtagttcgaccattggtaaatcttccggttgttccgatcggggagtcaattccataaggtttgtaat |
12064683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 12051943 - 12051663
Alignment:
| Q |
34 |
aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttgggcccatcg-ggaag---tcgatcccgtaaggattgtaatttg |
129 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| | || ||||| ||||| || ||||| ||||||| |
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|
| T |
12051943 |
aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaa |
12051844 |
T |
|
| Q |
130 |
atcttggagagttagcaggaaggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttgggatttcccattgacaga |
229 |
Q |
| |
|
|| | | || ||| ||||||| ||||||||| ||| |||| ||||||| || ||||||||||| |||| ||| ||||| ||||| ||| |||| |
|
|
| T |
12051843 |
attaagcaaaggtag---gaaggttattgttgttttcactatcatataaagagtccccaaagataaacagactaggtacttgatatttctcatagacact |
12051747 |
T |
|
| Q |
230 |
ttgctgcaaatagtttgcagacaagagaagaattggaaacaccaaccatggctttatcatagattccatatctaagaagaaaat |
313 |
Q |
| |
|
|| || ||||||||||| |||| || |||||| | | ||||||||||| ||| |||||||||||| | |||||||||||||| |
|
|
| T |
12051746 |
gtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaat |
12051663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 12059381 - 12059314
Alignment:
| Q |
17 |
ataatatggataagttaaaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttc |
84 |
Q |
| |
|
||||||| | ||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
12059381 |
ataatatagttaaattgaaagaatgttacttattatgtcaattgcagttcgaccattggtaaatcttc |
12059314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 5582732 - 5582793
Alignment:
| Q |
14 |
ttcataatatggataagttaaaagaat-gttacttattatgtcaattgtagttcgaccgttg |
74 |
Q |
| |
|
|||||||||| ||||| || ||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
5582732 |
ttcataatatagataaattgaaagaattgttacttattatgtcaattgcagttcgaccgttg |
5582793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 12064623 - 12064545
Alignment:
| Q |
237 |
aaatagtttgcagacaagagaagaattggaaacaccaaccatggctttatcatagattccatatctaagaagaaaatat |
315 |
Q |
| |
|
||||||||||| |||| || |||||| | | ||||||||||| ||| |||||||||||| | |||||||||||||||| |
|
|
| T |
12064623 |
aaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaatat |
12064545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 12059139 - 12059093
Alignment:
| Q |
269 |
caccaaccatggctttatcatagattccatatctaagaagaaaatat |
315 |
Q |
| |
|
||||||||||| ||| |||||||||||| | |||||||||||||||| |
|
|
| T |
12059139 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatat |
12059093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 36357988 - 36358051
Alignment:
| Q |
150 |
aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg |
213 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| || |||||||| || ||||||| |
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|
| T |
36357988 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
36358051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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