View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_28 (Length: 318)
Name: NF16265_low_28
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_28 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 45410521 - 45410798
Alignment:
| Q |
24 |
ctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaaagtg |
123 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410521 |
ctaattaaggggttgaacaatgagtggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaaagtg |
45410620 |
T |
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| Q |
124 |
aagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaatacccca |
223 |
Q |
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| T |
45410621 |
aagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaatacccca |
45410720 |
T |
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| Q |
224 |
tcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccataatt |
301 |
Q |
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| T |
45410721 |
tcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaactcattcacatcatctccccataatt |
45410798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 45419823 - 45420107
Alignment:
| Q |
17 |
gattattctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaacctt |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |
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| T |
45419823 |
gattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaacctt |
45419922 |
T |
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| Q |
117 |
aaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaa |
216 |
Q |
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| T |
45419923 |
aaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaa |
45420022 |
T |
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| Q |
217 |
taccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccataatt |
301 |
Q |
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| T |
45420023 |
taccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcacatcatctccccataatt |
45420107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 29799598 - 29799831
Alignment:
| Q |
37 |
tgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaaagtgaagttagagagaa |
136 |
Q |
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| T |
29799598 |
tgaacgattagaggaagtccataagctggccttagtgagagcataatacaaggtgaatgaatataatttggggaaatattaaaactaaatctagagagaa |
29799697 |
T |
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| Q |
137 |
gtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgca |
236 |
Q |
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| T |
29799698 |
gaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggttgca |
29799797 |
T |
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| Q |
237 |
tccaccattaacatcatccatgaacctctctggt |
270 |
Q |
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| T |
29799798 |
tccaccatttacatcatccatgaatctttctggt |
29799831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 26835014 - 26835298
Alignment:
| Q |
17 |
gattattctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaacctt |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |
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| T |
26835014 |
gattatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaacctt |
26835113 |
T |
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| Q |
117 |
aaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaa |
216 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835114 |
aaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaa |
26835213 |
T |
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| Q |
217 |
taccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccataatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
26835214 |
taccccatcttgtgtttgcatccaccattaacatcatcgacgaacctctctggtttgaactcattcacatcatctccccataatt |
26835298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 63457 - 63596
Alignment:
| Q |
133 |
agaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtt |
232 |
Q |
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||||||| ||||||||||| || |||||||| || ||||||| ||||||| ||| |||||||||||| |||||||| || |||||||| |||| | |
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| T |
63457 |
agaagtagggttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggt |
63556 |
T |
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| Q |
233 |
tgcatccaccattaacatcatccatgaacctctctggttt |
272 |
Q |
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|||| | ||||| |||||| |||||||||||||||||| |
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| T |
63557 |
ggcattccccattggcatcattcatgaacctctctggttt |
63596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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