View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_32 (Length: 293)
Name: NF16265_low_32
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 47782406 - 47782682
Alignment:
| Q |
1 |
tttttatacgaatacaaagttcatcatcttcatctagatctattccggcaatgggcgacgtattttagtccaatccattttctatcnnnnnnnnggtgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||| |
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| T |
47782406 |
tttttatacgaatacaaagttcatcatcttcatctagatctattccggtaacgagcgacgtattttagtccaatccattttctatcttttttttggtgca |
47782505 |
T |
|
| Q |
101 |
aatgcaattttctatctttgtgagccagacgcaaagttgagcacccgctcaaagtttcaagtaattaaagaggacacgagaatatgacattccagctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47782506 |
aatgcaattttctatctttgtgagccagacgcaaagttgagcacccgctcaaagtttcaagtaattaaagaggacacgagaatatgacattccagctaaa |
47782605 |
T |
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| Q |
201 |
gtggtaaatataccaccaaatatgactattgtttgcatggaccatttttgatgccaccaaatttgatgcaagtgttg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47782606 |
gtggtaaatataccaccaaatatgactattgtttgcatggaccattttttatgccaccaaatttgatgcaagtgttg |
47782682 |
T |
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