View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16265_low_39 (Length: 253)
Name: NF16265_low_39
Description: NF16265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16265_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 42998841 - 42998624
Alignment:
| Q |
18 |
atgaataaacaaaagttaaagatgtgtttgtcttagctaaaatataagttgtttcattgatttctaacaaacttaacatgaaagatattaaaattaaaga |
117 |
Q |
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| T |
42998841 |
atgaataaacaagagttaaagatgtgtttgtcttagttaaaatataagttgttttattgatttctaacaaactagacatgaaagatattaaaattaaaga |
42998742 |
T |
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| Q |
118 |
aaaataaatatctacaaccatctaatatgacatcgaattctaatacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42998741 |
aaaataaatatctacaaccatctaatatgacatcgaattctaagacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaa |
42998642 |
T |
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| Q |
218 |
atccacatattctacttg |
235 |
Q |
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|||||||||||||||||| |
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| T |
42998641 |
atccacatattctacttg |
42998624 |
T |
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